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. 2007 Mar 30;73(11):3536–3546. doi: 10.1128/AEM.00225-07

TABLE 7.

Predicted C. hutchinsonii polysaccharide binding proteins lacking predicted catalytic domains

Gene Predicted function of gene producta Predicted localizationb Mol massc (kDa) Modular structured
CHU_1051 Candidate polysaccharide binding protein Extracellular/outer membrane 138.2 FN3-X1-CBM6-X1-PKD-X1-D5
CHU_1221 Candidate polysaccharide binding protein Extracellular/outer membrane 175.4 CBM9-IG-PKD-PKD-PKD-PKD-PKD-PKD-D5
CHU_1238 Candidate polysaccharide binding protein Extracellular/outer membrane 132.7 X100-X1-CBM9-PKD-PKD-PKD-PKD-X1-D5
a

Assigned by routines used for updating the CAZY database (http://www.cazy.org/CAZY/), using the criteria indicated in Table 1.

b

Predicted using the default settings of PSORTb (21). Predicted lipoproteins were identified using LipoP (33).

c

Molecular mass of primary product of translation, including any predicted signal peptide.

d

Modular structure is indicated by the following abbreviations: CBM, carbohydrate binding module (number indicates family), as assigned by CAZY; D5, carboxy-terminal domain of Rhodothermus marinus xylanases predicted to be involved in attachment to the cell surface (34); FN3, fibronectin type 3 domain (Pfam number PF00041); IG, immunoglobulin I-set domain (Pfam number PF00047); PKD, polycystic kidney disease protein PKD1 (Pfam number PF00801); and X1 and X100, conserved domains of unknown function.