TABLE 7.
Gene | Predicted function of gene producta | Predicted localizationb | Mol massc (kDa) | Modular structured |
---|---|---|---|---|
CHU_1051 | Candidate polysaccharide binding protein | Extracellular/outer membrane | 138.2 | FN3-X1-CBM6-X1-PKD-X1-D5 |
CHU_1221 | Candidate polysaccharide binding protein | Extracellular/outer membrane | 175.4 | CBM9-IG-PKD-PKD-PKD-PKD-PKD-PKD-D5 |
CHU_1238 | Candidate polysaccharide binding protein | Extracellular/outer membrane | 132.7 | X100-X1-CBM9-PKD-PKD-PKD-PKD-X1-D5 |
Assigned by routines used for updating the CAZY database (http://www.cazy.org/CAZY/), using the criteria indicated in Table 1.
Predicted using the default settings of PSORTb (21). Predicted lipoproteins were identified using LipoP (33).
Molecular mass of primary product of translation, including any predicted signal peptide.
Modular structure is indicated by the following abbreviations: CBM, carbohydrate binding module (number indicates family), as assigned by CAZY; D5, carboxy-terminal domain of Rhodothermus marinus xylanases predicted to be involved in attachment to the cell surface (34); FN3, fibronectin type 3 domain (Pfam number PF00041); IG, immunoglobulin I-set domain (Pfam number PF00047); PKD, polycystic kidney disease protein PKD1 (Pfam number PF00801); and X1 and X100, conserved domains of unknown function.