TABLE 2.
Primers used in this study
| Gene and primer | Sequence (5′ → 3′)a | Reference(s) |
|---|---|---|
| 16S rRNA | ||
| 16F27 | AGAGTTTGATCMTGGCTCAG | 23 |
| 16R1492 | TACGGYTACCTTGTTACGACTT | |
| ITS1 | ||
| sp1 | ACCTCCTTTCTAAGGAGCACC | 32 |
| sp2 | GATGCTCGCAACCACTATCCA | |
| gyrB | ||
| gyrBA | GAGTTGGTGCGGCGTAAGAGC | 10 |
| gyrBE | CGGCCATCCARCACGATCTTG | |
| hsp65 | ||
| TB11 | ACCAACGATGGTGTGTCCAT | 38 |
| TB12 | CTTGTCGAACCGCATACCCT | |
| recA | ||
| recF3 | GGCAARGGYTCGGTSATGC | 4 |
| recF4 | TCGACCAACTACTTCTARCG | |
| recR2 | TTGATCTTCTTCTCGATCTC | |
| rpoB | ||
| MycoF | GGCAAGGTCACCCCGAAGGG | 1 |
| MycoR | AGCGGCTGCTGGGTGATCATC | |
| MycoseqF | GAAGGGTGAGACCGAGCTGAC | |
| MycoseqR | GCTGGGTGATCATCGAGTACGG | |
| sodA | ||
| Z205F | ACGTTCACCACAGCAAGCACCA | 11, 48 |
| Z212R | TCGGCCCAGTTCACGACGTT | |
| GSOD2R | TCGGCCAGTTCACGACGTTCCA |
a
M = A or C; N = A, C, G, or T; R = A or G; S = C or G; Y = C or T.