TABLE 2.
Comparative analysis of the thumb regions of GH11 endoxylanase sequences from other phytopathogenic fungi
| Endoxylanasea | Data bank referenceb | Thumb sequencec |
|---|---|---|
| A.bra1 | WUSTL/Cont6.39 | NQPSIDG-TATF |
| A.bra2 | WUSTL/Cont0.168 | NQPSIDG-TKTF |
| A.bra3 | WUSTL/Cont6.49 | NKPSIEG-TRTF |
| A.bra4 | WUSTL/Cont4.272 | NQPSIQG-TTTF |
| A.sp | DQ641271 | NQPSIDG-TATF |
| A.pis | Z68891 | NQPSIDG-TQTF |
| B.rho | CS272686 | NAPSIDG-TQTF |
| B.fuc1 | AAID01000748 | NQPSIIG-TATF |
| B.fuc2 | AAID01000419 | NQPSVQG-TATF |
| B.fuc3 | AAID01003217 | NEPSIVG-TATF |
| C.pur | Y16969 | NQPSILG-TNTF |
| C.car1 | L13596 | NQPSIDG-TRTF |
| C.car2 | U58915 | NQPSIDG-TRTF |
| C.car3 | U58916 | NQPSIVG-TTTF |
| C.sat | AJ004802 | NQPSIDG-TRTF |
| F.oxy1 | AF246831 | QQPSIDG-TQTF |
| F.oxy2 | AF246830 | NAPSIDG-TQTF |
| G.mon1 | AAIM02000174 | NQPSIDG-QQTF |
| G.mon2 | AAIM02000091 | NAPSIDG-TQTF |
| G.mon3 | AAIM02000113 | NAPSIEG-NKTF |
| M.gri1 | AACU02000386 | NQPSIEG-TRTF |
| M.gri2 | AACU02000365 | NQPSIDG-TRTF |
| M.gri3 | AACU02000636 | NQPSIDG-TKTF |
| M.gri4 | AACU02000633 | NKPSIEG-TRTF |
| M.gri5 | AACU02000500 | NAPSIIG-DADF |
| M.gra1 | Cogeme/mg[0935] | NQPSIDA-RRPF |
| M.gra2 | JGI/Mycgr/scaf4:1008265:1008944 | NQPSIDG-TQTF |
| N.hae1 | JGI/Necha2/34530 | NAPSIEG-TQTF |
| N.hae2 | JGI/Necha2/106153 | NAPSIEG-TRTF |
| N.hae3 | JGI/Necha2/19304 | NVSSSE---QTV |
| P.nod1 | AAGI01000353 | NQPSIDG-TRTF |
| P.nod2 | AAGI01000307 | NQPSIDG-TSTF |
| P.nod3 | AAGI01000275 | NQPSIDG-TSTF |
| P.nod4 | AAGI01000203 | NQPSIQG-TSTF |
| P.nod5 | AAGI01000226 | QKPSIEG-TRTF |
| P.nod6 | AAGI01000183 | NAPSIIGDNTDF |
| S.com | AAS31739 | NAPSIDG-TQTF |
| S.scl1 | AAGT01000462 | NQPSVQG-TATF |
| S.scl2 | AAGT01000343 | NEPSIVG-TATF |
| S.scl3 | AAGT01000133 | NEPSIVG-TATF |
| S.tur1 | AJ238895 | NQPSIDG-TRTF |
| S.tur2 | AJ548879 | NQPSIDG-TRTF |
| U.may | AACP01000245 | DQPSIQG-TKTF |
| V.dah | DQ449069 | NQPSIDG-TRTF |
Putative endoxylanase genes were identified by a tblastn search with the XylA and XylB sequences in GenBank (http://www.ncbi.nlm.nih.gov/GenBank/), FGI (http://www.broad.mit.edu/annotation/fgi/), JGI (http://www.jgi.doe.gov/), Cogeme (http://www.cogeme.man.ac.uk/), TIGR (http://www.tigr.org/), Trust Sanger Center (http://www.sanger.ac.uk/), and WUSTL (http://genome.wustl.edu/). Derivations of endoxylanase designations not introduced in the text are as follows: A.bra, Alternaria brassicicola; A.sp, Alternaria sp. strain HB186; A.pis, Ascochyta pisi; B.rho, Botryosphaeria rhodina (Lasiodiplodia theobromae); C.pur, Claviceps purpurea (Sphacelia purpurea); C.car, Cochliobolus carbonum (Bipolaris zeicola); C.sat, Cochliobolus sativus (Bipolaris sorokiniana); F.oxy, Fusarium oxysporum; G.mon, Gibberella moniliformis (Fusarium verticillioides); M.gri, Magnaporthe grisea; S.com, Schizophyllum commune; S.tur, Setosphaeria turcica (Helminthosporium turcicum); U.may, Ustilago maydis; V.dah, Verticillium dahliae.
With the exception of the codes that are preceded by the above-mentioned genome centers (WUSTL, JGI, and Cogeme), the data bank references refer to GenBank accession numbers.
Aberrant sequence characteristics are underlined.