TABLE 1.
Distribution of differences from strain Arkansas by functional category
| Category | Total length (bp) | Difference from strain Arkansas in strain:
|
Avg rate (kb−1) | |||
|---|---|---|---|---|---|---|
| Wakulla
|
Liberty
|
|||||
| No. | Rate (kb−1) | No. | Rate (kb−1) | |||
| Cell envelope | 45,936 | 1,342 | 29.21 | 1,511 | 32.89 | 31.05 |
| rRNA | 4,382 | 89 | 20.31 | 0 | 0.00 | 10.16 |
| Hypothetical proteins | 134,832 | 1,132 | 8.40 | 1,031 | 7.65 | 8.02 |
| Disrupted reading frame | 171 | 0 | 0.00 | 2 | 11.70 | 5.85 |
| Conserved hypothetical proteins | 88,142 | 364 | 4.13 | 642 | 7.28 | 5.71 |
| Intergenic regions | 230,774 | 592 | 2.57 | 1,108 | 4.80 | 3.68 |
| Unknown function | 93,622 | 251 | 2.68 | 318 | 3.40 | 3.04 |
| Central intermediary metabolism | 1,698 | 3 | 1.77 | 4 | 2.36 | 2.06 |
| Protein synthesis | 91,797 | 165 | 1.80 | 195 | 2.12 | 1.96 |
| Mobile and extrachromosomal element functions | 4,763 | 9 | 1.89 | 9 | 1.89 | 1.89 |
| Biosynthesis of cofactors, prosthetic groups, and carriers | 51,912 | 119 | 2.29 | 53 | 1.02 | 1.66 |
| tRNA | 2,860 | 4 | 1.40 | 5 | 1.75 | 1.57 |
| Transcription | 28,137 | 58 | 2.06 | 22 | 0.78 | 1.42 |
| Cellular processes | 29,157 | 36 | 1.23 | 46 | 1.58 | 1.41 |
| Energy metabolism | 88,473 | 148 | 1.67 | 98 | 1.11 | 1.39 |
| Transport and binding proteins | 34,129 | 32 | 0.94 | 57 | 1.67 | 1.30 |
| Regulatory functions | 12,315 | 9 | 0.73 | 23 | 1.87 | 1.30 |
| Fatty acid and phospholipid metabolism | 15,012 | 23 | 1.53 | 15 | 1.00 | 1.27 |
| Amino acid biosynthesis | 24,183 | 31 | 1.28 | 29 | 1.20 | 1.24 |
| Protein fate | 96,477 | 131 | 1.36 | 82 | 0.85 | 1.10 |
| DNA metabolism | 61,412 | 83 | 1.35 | 52 | 0.85 | 1.10 |
| Purines, pyrimidines, nucleosides, and nucleotides | 38,767 | 50 | 1.29 | 31 | 0.80 | 1.04 |
| Structural RNA | 746 | 0 | 0.00 | 0 | 0.00 | 0.00 |