TABLE 1.
Reference strains and clinical isolates used in this study
| Species (teleomorph)a | Reference strain(s)b | Clinical isolate(s) | Total no. of strains |
|---|---|---|---|
| Candida spp. | |||
| Candida albicans | BCRC 20511, 20512T, 20513, 20518, 20519, 21538, 22063, CBS 2718, 2730, 5990, 6431, 6589 | 343, 1009, 2514, 3321, 3434, 3623, 3653, 4252, 4339, ATTC 66390, LMA 938838, 962507, 499010350, RB 1325, 1326, 1331 | 28 |
| Candida boidinii | BCRC 20464T, 20472, 21432, 21483, 21757 | 5 | |
| Candida cacaoi (Yamadazyma farinosa) | BCRC 21368T, 21682, 21881 | 3 | |
| Candida cantarelli | BCRC 21613T, CBS 5383, 5445, 5654 | 4 | |
| Candida catenulata | BCRC 21507, 22316T, CBS 564, 565, 1904 | 5 | |
| Candida chodatii (Pichia burtonii) | BCRC 22087T, 22012 | 2 | |
| Candida colliculosa (Torulaspora delbrueckii) | BCRC 21429, 22074T, CBS 158, 6991 | 4 | |
| Candida dattila (Lachancea thermotolerans) | BCRC 22043, CBS 1877, 2803, 2860, 2907 | 5 | |
| Candida dubliniensis | CBS 2747, 7987, 7988, 8500, 8501 | RB 1168, 1271, 1306 | 8 |
| Candida famata (Debaryomyces hansenii) | BCRC 22304, 22712, CBS 1791, 1792, 1795T | 5 | |
| Candida freyschussii | BCRC 21555T, CBS 2161 | 2 | |
| Candida glabrata | BCRC 20586T, CBS 860, 861, 2175, 7307 | 1762, 9796, 9787, LMA 901085, 905756, 945574, RB 1284, 1295, 1324 | 14 |
| Candida globosa (Citeromyces matritensis) | CBS 162T, 864 | 2 | |
| Candida guilliermondii (Pichia guilliermondii) | BCRC 20862, 21500T, 21549, 21559 | RB 1012, 1055, 1216 | 7 |
| Candida haemulonii | BCRC 21572T, CBS 6590, 7801, 7802 | 4 | |
| Candida holmii (Kazachstania exigua) | BCRC 21524T, 21999, 22000 | 3 | |
| Candida inconspicua | BCRC 21658T, CBS 990, 1735, 2833 | LMA 90289, RB 1226 | 6 |
| Candida intermedia (Kluyveromyces cellobiovorus) | BCRC 20863, 21250T, 21604, 22567 | 4 | |
| Candida kefyr (Kluyveromyces marxianus) | BCRC 20516, 20517, 21269, 21355, 22057T | LMA 911323, 938657, 938779, 944459, 947644, RB 1227 | 11 |
| Candida krusei (Issatchenkia orientalis) | BCRC 20514T, 21321, 21720, 21796, 22342 | 2283, 16462, LMA 911256, 945615, 948501, RB 1222, 1237, 1317 | 13 |
| Candida lambica (Pichia fermentans var. fermentans) | BCRC 21347, 22067T, 22068, 22090, 22091 | 5 | |
| Candida lipolytica (Yarrowia lipolytica) | BCRC 20864, 21541, 21542, 21596 | 4 | |
| Candida lusitaniae (Clavispora lusitaniae) | BCRC 20326, 21387T, 21740, CBS 7270 | LMA 932648, 947060, 947315, 948764, RB 1283, 1288, 1294 | 11 |
| Candida maltosa | BCRC 21327, 21482, 21614T | 3 | |
| Candida melibiosica | CBS 5814T, 6211 | 2 | |
| Candida membranifaciens | BCRC 21563, 22398T, 22399 | 3 | |
| Candida norvegensis (Pichia norvegensis) | BCRC 21851, 22096T, 22097, CBS 1911 | 4 | |
| Candida norvegica | BCRC 21616T, CBS 2670, 4027, 4737 | 4 | |
| Candida parapsilosis, genotype I | BCRC 20515T, 21253, 21544 | 240, 282, 308, 403, 1905, 2985, 3080, 3851, 7410, 9360, 9692, LMA 938558, 961299, RB 1318, 1320 | 18 |
| C. parapsilosis, genotype II (Candida orthopsilosis) | 770, 8053 | 2 | |
| Candida parapsilosis, genotype III (Candida metapsilosis) | BCRC 20865 | 43, 1833, 2304, C4-2 | 5 |
| Candida pelliculosa (Pichia anomala) | BCRC 20857, 20858, 21359, 21741, 22583T | 4731, LMA 892971, RB 766, 778, 913 | 10 |
| Candida pintolopesii (Kazachstania telluris) | BCRC 21439, 22003, 22239 | 3 | |
| Candida robusta (Saccharomyces cerevisiae) | BCRC 20263, 20270, 20271, 20405, 20490, 21447T | RB 1254, 1299 | 8 |
| Candida rugosa | BCRC 21356, 21709T | RB 1158 | 3 |
| Candida sake | BCRC 21621T, CBS 5690, 5740 | 3 | |
| Candida santamariae | BCRC 21562, 21617T, CBS 4261, 4515T | 4 | |
| Candida silvicola (Pichia holstii) | CBS 4069, 4140T, 4141 | 3 | |
| Candida sphaerica (Kluyveromyces lactis) | BCRC 21716, 22153, 22154, 22055, 22604 | 5 | |
| Candida steatolytica (Zygoascus hellenicus) | BCRC 21746T, 22232, CBS 7652 | 3 | |
| Candida tannotolerans (Vanderwaltozyma yarrowii) | BCRC 21747, 22822, CBS 2684, 8242 | 4 | |
| Candida tropicalis | BCRC 20520T, 20521, 21436, 21437, 21560 | 104, 1075, 2785, 4996, 8023, 8173, 8327, LMA 9077, 921810, 945762, RB 1298, 1330 | 17 |
| Candida utilis (Pichia jadinii) | BCRC 20260, 20325, 20334, 20860, 20928T, 21357 | 6 | |
| Candida valida (Pichia membranifaciens) | BCRC 22069T, 21399, 21441 | 3 | |
| Candida viswanathii | BCRC 21330T, 22554 | 2 | |
| Candida zeylanoides (Pichia dubia) | BCRC 21743T, 21749, 22396, CBS 947 | LMA 91304 | 5 |
| Non-Candida spp. | |||
| Arthroascus schoenii | BCRC 21401, 22503T, 22504, CBS 2556 | 4 | |
| Brettanomyces bruxellensis (Dekkera bruxellensis) | BCRC 20932, 21414T, 21440, 21518, 21519 | 5 | |
| Candida albidus | BCRC 20526, 21672T, 21860, CBS 969 | LMA 935479 | 5 |
| Cryptococcus curvatus | BCRC 21735, CBS 570, 2744, 8770 | 4 | |
| Cryptococcus laurentii | BCRC 20527T, 21997 | 2 | |
| Candida neoformans (Filobasidiella neoformans) | BCRC 20528T, 20532, 22241, 22873, 22874, 22875, CBS 883, 919, 1622, 6955, 6997 | 4439, 4889, 7241, LMA 94277, 925461, 935479, 957786, 959159, 49800123 | 20 |
| Cryptococcus uniguttulatus (Filobasidium uniguttulatum) | CBS 1727, 1730, 2770, 2994, 4257 | 5 | |
| Debaryomyces carsonii | BCRC 21529, 22098T, CBS 4409, 5254 | 4 | |
| Debaryomyces etchellsii | BCRC 21479T, CBS 2012, 5519, 5603 | 4 | |
| Debaryomyces maramus | BCRC 21526, CBS 1958T | 2 | |
| Kloeckera apiculata (Hanseniaspora uvarum) | BCRC 20539, 21362, CBS 312, 314, 2582 | 5 | |
| Kloeckera apis (Hanseniaspora guilliermondii) | BCRC 22105, 22106, 22112T, CBS 4378 | 4 | |
| Kloeckera japonica (Hanseniaspora valbyensis) | CBS 281, 479T, 2590 | 3 | |
| Kluyveromyces delphensis (Nakaseomyces delphensis) | BCRC 22017, CBS 2170 | 2 | |
| Kodamaea ohmeri | BCRC 21349, 21592, 22178T, 22556, 22557 | 5 | |
| Lachancea cidri | BCRC 21728T, CBS 2950, 2951, 5666 | 4 | |
| Lachancea fermentati | BCRC 21433, 21760T, 22453 | 3 | |
| Lodderomyces elongisporus | BCRC 21390T, CBS 2606, 5912 | 3 | |
| Pichia spartinae | BCRC 22766T, CBS 6059, 6077, 6661 | 4 | |
| Rhodotorula glutinis (Rhodosporidium diobovatum) | BCRC 20576, 21418T | 2 | |
| Rhodotorula minuta | BCRC 22482, 22483, 22484, 22485 | 4 | |
| Rhodotorula mucilaginosa | BCRC 21442, 21667T, 21712, 21713, 21770 | 5 | |
| Saccharomyces kluyveri | BCRC 21498T, 21977, 22001, CBS 2861 | 4 | |
| Saccharomycopsis fibuligera | BCRC 20455, 21379, 21380, 21449, 21465, 21511T | 6 | |
| Sporobolomyces salmonicolor (Sporidiobolus salmonicolor) | CBS 490, 4474 | 2 | |
| Trichosporon aquatile | BCRC 22271T, 22272, CBS 5973, 5988 | 4 | |
| Trichosporon asahii | CBS 2479, 2936, 4829, 7631 | 4 | |
| Trichosporon cutaneum | BCRC 21675T, 22273 | LMA 94117, 94256, 931422, 931440 | 6 |
| Trichosporon inkin | BCRC 21503T, CBS 7613, 7629, 7655 | 4 | |
| Trichosporon pullulans | BCRC 22275, 22313, CBS 2543 | 3 | |
| Williopsis saturnus var. saturnus | BCRC 20463, 21360, 21659, 21692, 21765 | 5 | |
| Zygosaccharomyces bisporus | BCRC 21505T, 21725, 21726 | 3 | |
| Zygotorulaspora florentinus | BCRC 21648T, CBS 748, 6078, 6703 | 4 |
a
Anamorphic names are used in this study, and teleomorphic species names are given in parentheses. Some species were only given the names of teleomorphs since they have no anamorphic names.
b
A superscript “T” indicates type strains.