TABLE 1.
Organism | No. of isolates found by ITS assay |
rpoBa
|
sodAb
|
hsp65c
|
|||
---|---|---|---|---|---|---|---|
No. of isolates | % Identity | No. of isolates | % Identity | No. of isolates | % Identity | ||
M. abscessus | 55 | 47 | 100 | 42 | 100 | 44 | 100 |
2 | 99.9 | 2 | 99.8 | ||||
1 | 99.6 | ||||||
1 | 99.3 | ||||||
M. chelonae | 8 | 1 | 100 | 4 | 100 | 6 | 100 |
4 | 99.7 | 2 | 99.8 | 1 | 99.8 | ||
3 | 99.6 | 1 | 99.5 | 1 | 98.8 | ||
1 | 98.4 | ||||||
M. massiliense | NAd | 4 | 99.3 | 11 | 100 | 11 | 100 |
rpoB reference sequences under GenBank accession numbers AY147164 for M. abscessus, AY147163 for M. chelonae, and AY593981 M. massiliense.
sodA reference sequences under GenBank accession numbers AY458102 for M. abscessus, AY458104 for M. chelonae, and AY593975 for M. massiliense.
hsp65 reference sequences under GenBank accession numbers AY498743 for M. abscessus, AY458082 for M. chelonae, and AY596465 for M. massiliense.
NA, not applicable.