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. 2007 May 25;35(Web Server issue):W512–W521. doi: 10.1093/nar/gkm307

Table 1.

Benchmark comparison of calculated dipole moments (Debye) with and without hydrogens, using Parse 3 charges

PDB_id or name Including hydrogens Without hydrogens Anglea Measured Description
Snake AChE(22) 1647 1615 3 1000(4) Snake AChE homology model
1p0i 1718 1636 1 Human butyrylcholinesterase
Glutactin 105 108 8 Drosophila glutactin
5cha 522 494 6 540(14) Bovine α-chymotrypsin
2gct 453 492 7 465(14) Bovine γ-chymotrypsin
2hhb 101 48 30 45(13) Human deoxy-hemoglobin
1hho 210 196 4 271(13) Human oxy-hemoglobin

aAngle in degrees between the calculated dipole vectors with and without hydrogens.