Figure 3.

Motif-level output from SCOPE. This is the page that results when the first motif in Figure 2 is clicked. The sequence logo displays additional information from what is displayed in the consensus sequence. The PWM provides the details of occurrence of each nucleotide for each position of the motif. The table at the bottom lists all of the occurrences of this motif in the upstream sequences of the set of genes submitted. This bipartite motif was identified by the SPACER algorithm, which has also helped specify some preferences for nucleotides in the internal “spacer” sequence.