Table 1.
The statistics of phosphorylation sites obtained from Phospho.ELM and Swiss-Prot
Data source | Number of phosphorylated proteins | Number of phosphorylation sites | ||||
---|---|---|---|---|---|---|
Serine (S) | Threonine (T) | Tyrosine (Y) | Histidine (H) | Total | ||
Phospho.ELM | 3674 | 9917 | 1890 | 1804 | 1 | 13 612 |
Swiss-Prot* | 3148 | 4846 | 1035 | 901 | 42 | 6832 |
Combined (non-redundant) | 5842 | 11 888 | 2433 | 2179 | 43 | 16 551 |
It notices that the sum of serine, threonine, tyrosine and histidine in Swiss-Prot is not equal to 6832, because there are several phosphorylation sites located on other kinds of residue. *The entries which contain residues annotated as ‘phosphorylation’ in the ‘MOD_RES’ are extracted and the entries annotated as ‘by similarity’, ‘potential’ and ‘probable’ are excluded.