Table 2.
Details of genomes included in EuMicroSatdb
Species | Build/Assembly/Ver. | Source | Web Link |
Saccharomyces cerevisiae | SGD 1, Nov 2005 | Ensembl | http://www.ensembl.org |
Schizosaccharomyces pombe | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Aspergillus oryzae RIB40 | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Aspergillus fumigatus | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Cryptococcus neoformans varJEC21 | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Encephalitozoon cuniculi | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Eremothecium gossypii | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Candida glabrata CBS138 | Genolevures 2 Release 2, May 2006 | Genolevures | http://cbi.labri.u-bordeaux.fr |
Debaryomyces hansenii | Genolevures 2 Release 2, May 2006 | Genolevures | http://cbi.labri.u-bordeaux.fr |
Kluyveromyces lactis | Genolevures 2 Release 2, May 2006 | Genolevures | http://cbi.labri.u-bordeaux.fr |
Yarrowia lipolytica | Genolevures 2 Release 2, May 2006 | Genolevures | http://cbi.labri.u-bordeaux.fr |
Caenorhabditis elegans | WS160, July 2006 | Ensembl | http://www.ensembl.org |
Plasmodium falciparum | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Anopheles gambiae | AgamP3, Feb 2006 | Ensembl | http://www.ensembl.org |
Drosophila melanogaster | BDGP 4.3, July 2005 | Ensembl | http://www.ensembl.org |
Apis mellifera | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Tribolium castaneum | NCBI release | NCBI | ftp://ftp.ncbi.nlm.nih.gov |
Oryza sativa ssp.japonica | Build 4.0 | IRGSP | http://rgp.dna.affrc.go.jp/IRGSP/ |
Oryza sativa ssp. indica | 2003-08-01 BGI | BGI | http://rise.genomics.org.cn |
Arabidopsis thaliana | ver. Jan 22 2004 | TAIR | http://www.arabidopsis.org |
Ciona intestinalis | JGI 2, Mar 2005 | Ensembl | http://www.ensembl.org |
Tetraodon nigroviridis | TETRAODON 7, Apr 2003 | Ensembl | http://www.ensembl.org |
Danio rerio | Zv6, Mar 2006 | Ensembl | http://www.ensembl.org |
Rattus norvegicus | RGSC 3.4, Dec 2004 | Ensembl | http://www.ensembl.org |
Mus musculus | NCBI m36, Dec 2005 | Ensembl | http://www.ensembl.org |
Gallus gallus | WASHU2, May 2006 | Ensembl | http://www.ensembl.org |
Canis familiaris | CanFam 1.0, July 2004 | Ensembl | http://www.ensembl.org |
Macaca mulatta | MMUL 1.0, Feb 2006 | Ensembl | http://www.ensembl.org |
Bos taurus | Btau_3.1, Aug 2006 | Ensembl | http://www.ensembl.org |
Pan troglodytes | PanTro 2.1, Mar 2006 | Ensembl | http://www.ensembl.org |
Homo sapiens | NCBI 36, Oct 2005 | Ensembl | http://www.ensembl.org |