Table 3.
List of horizontal gene transfer candidates from M. incognita
Best bacterial match | Best eukaryotic match* | |||
Candidate | Name | % identity | Name | e-value, %identity |
β1,4-endoglucanases | ||||
MI00537 | Bacillus sp. KSM-N252 | (2.7e-24, 40%) | Orpinomyces joyonii | (5.6e-10, 32%) |
MI01011 | Pseudomonas fluorescens | (2.5e-75, 47%) | Orpinomyces joyonii | (9.4e-41, 36%) |
MI01381 | Streptomyces coelicolor | (6.9e-13, 31%) | Orpinomyces joyonii | (0.013, 27%) |
MI01842 | Pseudomonas fluorescens | (1.2e-35, 44%) | None | |
Pectinases | ||||
MI00252 | Ralstonia solanacearum | (8.8e-61, 50%) | Arabidopsis thaliana | (5.1e-7, 40%) |
MI00592 | Streptomyces coelicolor | (3.9e-12,31%) | Fusarium solani | (1.9e-7, 33%) |
Rhizobial matches | ||||
NodL | Rhizobium leguminosarum | (8e-54, 58%) | Saccharomyces cerevisiae | (5e-38, 46%) |
Glutamine synthetase | Mesorhizobium loti | (9e-45, 56%) | Blumeria graminis | (2e-15, 33%) |
L-Threonine aldolase | Brucella melitensis | (1e-23, 48%) | Leishmania major | (0.096, 25%) |
Unknown function | Sinorhizobium meliloti | (9e-45, 51%) | Caenorhabditis elegans | (3.9, 26%) |
Unknown function | ||||
MI01406 | Amycolatopsis mediterranei | (4.9e-28, 53%) | Arabidopsis thaliana | (2.5e-4, 33%) |
MI00267 | Amycolatopsis mediterranei | (3.0e-28, 58%) | Aspergillus fumigatus | (5.4e-6, 32%) |
The best bacterial and eukaryotic matches are listed with their e-values from a BLASTX search and percent identity as reported by BLAST. *Best match to any eukaryote other than a plant-parasitic nematode.