Table 4.
Numbers of (Q+N)-rich domains for the six proteomes
Category | Budding yeast | Fission yeast | Fruit fly | Nematode | Arabidopsis | Human | |
1 | (Q+N)-rich domains according to a Q, N or Q+N bias* | 172 | 22 | 853 | 315 | 213 | 194 |
2 | (1) plus filter for charged and hydrophobic residues† | 96 | 14 | 473 | 216 | 125 | 69 |
3 | (2) plus requirement for a subsidiary bias for G, Y or S‡ | 31 | 7 | 86 | 80 | 35 | 21 |
*The total number of (Q+N)-rich domains. These are all LPSs that have a Q or N bias with Pbias < 1 × 10-13 or a {QN} bias with Pbias < 1.8 × 10-14. †A filter is used so that only LPSs that have a subsidiary bias against {DERK} with a Pbias < 6.5 × 10-3 and against {VILM} with a Pbias < 2 × 10-2 are considered. ‡A filter is used so that only LPSs that have a subsidiary bias for one of the residues G, Y or S with a Pbias < 5 × 10-4 are considered.