TABLE 1.

Summary of ORFs identified by significant homology (BLAST search) or prediction or previously experimentally verified

ORF	Length (amino acids)	CDS (start codon- stop codon)a	Gene or function of closest relative (source)	Data bank reference	Identityb (%)	e valuec
1	706	1-2118c	NRPSd VibF (V. cholerae)	gb|AAG00566.1|	209/535 (39)	e-103
2	302	2207-3115c	Transposase for ISV-A1 (V. anguillarum)	gb|AAA81774.1|	301/302 (99)	e-173
3	314	3578-4522	Iron transport protein FatD (V. anguillarun)	gb|AAA25641.1|	314/314 (100)	e-141
4	317	4519-5472	Iron transport protein FatC (V. anguillarum)	gb|AAA25642.1|	317/317 (100)	e-139
5	322	5526-6494	Iron transport protein FatB (V. anguillarum)	gb|AAA91580.1|	322/322 (100)	e-178
6	726	6598-8778	Iron transport protein FatA (V. anguillarum)	gb|AAA91581.1|	726/726 (100)	0.0
7	1,048	8863-12009	NRPS AngR (V. anguillarum)	gb|AAA79860.1|	1,048/1,048 (100)	0.0
8	252	12006-12764	NRPS AngT (V. anguillarum)	gb|AAA79861.1|	252/252 (100)	e-150
9	442	12862-14190c	Rhizobactin biosynthesis protein RhbE (Sinorhizobium meliloti)	gb|AAK65920.1|	237/435 (54)	e-143
10	956	14314-17184c	NRPS VibF (V. cholerae)	gb|AAG00566.1|	332/931 (35)	e-157
11	306	17396-18316	Transposase for ISV-A2 (V. anguillarum)	gb|AAA81776.1|	305/306 (99)	6-174
12	322	18437-19405	Transposase (Vibrio vulnificus)	gb|AAO10886.1|	301/322 (93)	e-152
13	386	19652-20854	Histidine decarboxylase AngH (V. anguillarum)	emb|CAA83945.1|	386/386 (100)	0.0
14	536	20970-22580	ABC transporter homologue (E. coli)	gb|AAN79727.1|	137/548 (25)	3e-27
15	560	22577-24259	Putative ABC transporter (Streptomyces coelicolor)	emb|CAC17507.1|	132/461 (28)	2e-40
16	105	24444-24761	Orf1 ISVme (V. metschnikovii)	gb|AAN33020.1|	24/96 (25)	1.4
17	117	24758-25111	Orf2 ISVme (V. metschnikovii)	gb|AAN33021.1|	41/103 (39)	e-15
18	513	25171-26712	Orf3 ISVme (V. metschnikovii)	gb|AAN33022.1|	217/526 (41)	2e-99
19	304	26817-27731c	RepA (Aeromonas salmonicida)	gb|AAK97757.1|	52/205 (25)	e-07
20	343	27728-28759c	Related to DNA mismatch repair protein (Streptococcus mutans)	gb|AAN59686.1|	28/93 (30)	0.67
21	362	29673-30761c	Transposase for IS801 (Pseudomonas syringae)	emb|CAA40540.1||	171/341 (50)	8e-92
22	128	31031-31417	Unknown (V. vulnificus)	gb|AAO07608.1|	34/99 (34)	0.014
23	99	31555-31854	Conserved hypothetical protein (Pseudomonas putida)	emb|CAC86752.1|	54/92 (58)	e-22
24	96	31878-32168	Hypothetical protein (P. putida)	emb|CAC86751.1|	48/83 (57)	2e-21
25	409	32297-33526c	GLIMMER, GENEMARK prediction; no homology
26	127	33513-33896c	GLIMMER prediction; no homology
27	323	33902-34873c	ParB (Xylella fastidiosa)	gb|AAF85627.1|	64/218 (29)	5e-16
28	273	34870-35691c	ParA (Leptospira interrogans)	gb|AAN51545.1|	74/247 (29)	3e-22
29	514	35892-37436	Putative bacteriophage protein (Salmonella enterica)	gb|AAO69541.1|	101/307 (32)	5e-32
30	115	37505-37852	GLIMMER prediction; no homology
31	103	37883-38194	GLIMMER prediction; no homology
32	264	38616-39410	GLIMMER, GENEMARK prediction; no homology
33	104	39738-40052	GLIMMER, GENEMARK prediction; no homology
34	116	40152-40451	GLIMMER prediction; no homology
35	93	40396-40677	GLIMMER prediction; no homology
36	136	40727-41137	GLIMMER prediction; no homology
37	176	41246-41776	GLIMMER prediction; no homology
38	306	41945-42865c	Transposase for ISV-A2 (V. anguillarum)	gb|AAG33855.1|	306/306 (100)	e-174
39	239	43053-43772	NrgA (Photorhabdus luminescens) similar to EntD (E. coli)	gb|AAO17175.1|	91/227 (40)	3e-40
40	251	43873-44628	Iron(III) ABC transporter (Vibrio parahaemolyticus)	dbj|BAC62003.1|	183/250 (73)	e-101
41	287	44827-45690	AngB/G (V. anguillarum)	gb|AAG33854.1|	287/287 (100)	e-151
42	546	45741-47381c	DHBA-AMP ligase (V. cholerae)	gb|AAF93937.1|	307/536 (57)	0.0
43	393	47362-48543c	Isochorismate synthase (V. vulnificus)	gb|AAO07758.1|	252/392 (64)	e-149
44	306	48880-49800	Transposase for ISV-A2 (V. anguillarum)	gb|AAG33856.1|	306/306 (100)	e-174
45	277	49943-50776c	DHAPe synthase (V. vulnificus)	gb|AAO07756.1|	149/268 (55)	2e-82
46	513	50796-52337c	Orf3 ISVme (V. metschnikovii)	gb|AAN33022.1|	217/526 (41)	2e-99
47	117	52397-52750c	Orf2 ISVme (V. metschnikovii)	gb|AAN33021.1|	41/103 (39)	e-15
48	105	52747-53064c	Orf1 ISVme (V. metschnikovii)	gb|AAN33020.1|	24/96 (25)	1.4
49	115	53664-54011	GLIMMER prediction; no homology
50	153	55181-55561c	Putative transposase (Klebsiella pneumoniae)	emb|CAA09339.1|	98/151 (64)	4e-55
51	112	55679-55951c	Putative arylsulfatase regulatory protein (E. coli)	gb|AAN83151.1|	24/97 (24)	0.73
52	140	55971-56393c	GLIMMER prediction; no homology
53	389	56383-57552c	Hypothetical protein (Pseudomonas putida)	gb|AAN662271.1|	34/101 (33)	0.002
54	980	57830-60772	Transposase (Mesorhizobium loti)	dbj|BAB54451.1|	431/965 (44)	0.0
55	194	60891-61475	Putative resolvase (Serratia marcescens)	gb|AAN52496.1|	183/194 (94)	8e-88
56	464	61553-62947	SpnT (S. marcescens)	gb|AAN52497.1|	430/464 (92)	0.0
57	144	62944-63378	RecX (E. coli)	dbj|BAA16560.1|	54/146 (36)	e-18
58	299	63430-64329	Transposase for ISV-A2 (V. anguillarum) (partial)	gb|AAG33855.1|	293/293 (100)	e-166
59	175	64326-64853c	VibA (V. cholerae) (partial)	gb|AAF93939.1|	91/159 (57)	2e-42

^aCDS, coding sequence; c, complementary strand.

^bShown as number of identical amino acids/total number of amino acids in the region of homology identified by BLAST.

^cAn e value of >0.4 indicates no homology.

^dNRPS, nonribosomal peptide synthetase.

^eDHAP, 2-dehydro-3-deoxyphosphoheptonate aldolase.