Table 2.
Spearman rank correlation between features in relation to microsatellite motif length
x | y | mismatches | 3-mer (8 d.f.) | 4-mer (31 d.f.) | 5-mer (99 d.f.) | 6-mer (348 d.f.) | all (499 d.f.) |
compfreq | simpfreq | 0 | 0.915*** | 0.714*** | 0.860*** | 0.789*** | 0.840*** |
compfreq | simpfreq | 1 | 0.964*** | 0.900*** | 0.901*** | 0.693*** | 0.732*** |
compfreq | simpfreq | 2 | 0.960*** | 0.809*** | 0.844*** | 0.755*** | 0.805*** |
simprepe | comprepe | 0 | 0.736* | 0.19 | 0.138 | 0.390*** | 0.313*** |
simprepe | comprepe | 1 | 0.467 | 0.556*** | 0.183 | 0.519*** | 0.660*** |
simprepe | comprepe | 2 | 0.758* | 0.494** | 0.067 | 0.370*** | 0.488*** |
simppoly | comppoly | 0 | 0.024 | 0.029 | 0.201* | 0.068 | 0.127** |
simppoly | comppoly | 1 | 0.701* | 0.452** | 0.291** | 0.160** | 0.222*** |
simppoly | comppoly | 2 | 0.284 | -0.217 | 0.037 | 0.143** | 0.090* |
simpfreq | simprepe | 0 | 0.079 | 0.327 | -0.053 | 0.486*** | 0.487*** |
simpfreq | simprepe | 1 | 0.2 | 0.073 | 0.062 | 0.487*** | 0.404*** |
simpfreq | simprepe | 2 | 0.03 | 0.303 | -0.159 | 0.315*** | 0.363*** |
compfreq | comprepe | 0 | 0.517 | 0.167 | 0.236* | 0.296*** | 0.100* |
compfreq | comprepe | 1 | 0.333 | 0.015 | 0.433*** | 0.204*** | -0.05 |
compfreq | comprepe | 2 | -0.17 | 0.432* | 0.314** | 0.609*** | 0.601*** |
simprepe | simppoly | 0 | -0.018 | 0.073 | 0.168 | 0.185*** | 0.136** |
simprepe | simppoly | 1 | -0.255 | 0.263 | 0.055 | 0.130* | 0.115* |
simprepe | simppoly | 2 | -0.122 | 0.181 | 0.087 | 0.228*** | 0.129** |
comprepe | comppoly | 0 | -0.25 | 0.534** | -0.049 | -0.029 | 0.068 |
comprepe | comppoly | 1 | 0.105 | 0.298 | -0.099 | 0.201*** | 0.142** |
comprepe | comppoly | 2 | -0.614 | 0.082 | 0.292** | 0.434*** | 0.394*** |
*, p <= 0.05; **, p <= 0.01; ***, p <= 0.001 |