Table 3.
Mean frequency, repeat count, and polymorphism by motif length and GC content in perfect microsatellites
Length | GC content | simpfreq | compfreq | totfreq | fracsimp | simprepe | comprepe | simppoly | comppoly |
3 | 0 | 3.464 | 16.996 | 20.46 | 0.144 | 6.254 | 3.412 | 0.168 | 0.115 |
0.333 | 5.178 | 24.711 | 29.889 | 0.142 | 5.864 | 3.369 | 0.166 | 0.142 | |
0.667 | 4.66 | 21.682 | 26.342 | 0.163 | 5.646 | 3.354 | 0.169 | 0.146 | |
1 | 7.442 | 28.194 | 35.636 | 0.167 | 5.564 | 3.323 | 0.158 | 0.146 | |
4 | 0 | 0.8 | 29.279 | 30.079 | 0.022 | 4.407 | 2.058 | 0.131 | 0.106 |
0.25 | 0.353 | 24.872 | 25.225 | 0.012 | 4.555 | 2.042 | 0.147 | 0.108 | |
0.5 | 0.158 | 12.031 | 12.189 | 0.013 | 4.317 | 2.039 | 0.195 | 0.121 | |
0.75 | 0.148 | 10.598 | 10.746 | 0.012 | 4.345 | 2.03 | 0.169 | 0.113 | |
1 | 0.085 | 9.502 | 9.587 | 0.003 | 4.373 | 2.018 | 0.217 | 0.091 | |
5 | 0 | 0.663 | 6.274 | 6.937 | 0.076 | 3.171 | 2.051 | 0.123 | 0.103 |
0.2 | 0.245 | 3.426 | 3.671 | 0.05 | 3.194 | 2.031 | 0.144 | 0.112 | |
0.4 | 0.118 | 2.056 | 2.174 | 0.051 | 3.242 | 2.03 | 0.149 | 0.121 | |
0.6 | 0.091 | 1.293 | 1.384 | 0.056 | 3.264 | 2.04 | 0.163 | 0.135 | |
0.8 | 0.083 | 1.084 | 1.167 | 0.055 | 3.174 | 2.033 | 0.146 | 0.109 | |
1 | 0.104 | 1.927 | 2.03 | 0.055 | 3.18 | 2.026 | 0.122 | 0.099 | |
6 | 0 | 0.099 | 1.074 | 1.173 | 0.052 | 3.093 | 2.054 | 0.108 | 0.109 |
0.167 | 0.048 | 0.674 | 0.721 | 0.046 | 3.085 | 2.05 | 0.162 | 0.122 | |
0.333 | 0.034 | 0.399 | 0.433 | 0.067 | 3.188 | 2.046 | 0.188 | 0.142 | |
0.5 | 0.047 | 0.39 | 0.436 | 0.098 | 3.202 | 2.065 | 0.188 | 0.147 | |
0.667 | 0.05 | 0.286 | 0.335 | 0.133 | 3.106 | 2.086 | 0.192 | 0.152 | |
0.833 | 0.081 | 0.46 | 0.541 | 0.151 | 3.202 | 2.092 | 0.187 | 0.151 | |
1 | 0.084 | 0.462 | 0.546 | 0.137 | 3.079 | 2.068 | 0.183 | 0.116 |