Table 5.
Mean frequency, repeat count, and polymorphism by motif length and GC content in microsatellites with two allowed mismatched repeat positions
Length | GC content | simpfreq | compfreq | totfreq | fracsimp | simprepe | comprepe | simppoly | comppoly |
3 | 0 | 3.226 | 0.447 | 3.673 | 0.882 | 8.739 | 9.487 | 0.189 | 0.145 |
0.333 | 4.822 | 0.595 | 5.417 | 0.905 | 8.309 | 9.217 | 0.163 | 0.189 | |
0.667 | 4.037 | 0.483 | 4.521 | 0.896 | 8.051 | 8.418 | 0.172 | 0.214 | |
1 | 6.45 | 0.566 | 7.017 | 0.942 | 7.888 | 7.817 | 0.162 | 0.231 | |
4 | 0 | 1.107 | 0.101 | 1.208 | 0.917 | 5.497 | 5.513 | 0.133 | 0.152 |
0.25 | 0.577 | 0.074 | 0.651 | 0.919 | 5.585 | 5.878 | 0.191 | 0.169 | |
0.5 | 0.225 | 0.018 | 0.244 | 0.928 | 5.475 | 5.772 | 0.185 | 0.206 | |
0.75 | 0.237 | 0.024 | 0.262 | 0.909 | 5.504 | 5.578 | 0.174 | 0.176 | |
1 | 0.14 | 0.015 | 0.156 | 0.899 | 5.224 | 5.109 | 0.201 | 0.166 | |
5 | 0 | 0.763 | 0.073 | 0.836 | 0.918 | 4.188 | 4.283 | 0.129 | 0.144 |
0.2 | 0.314 | 0.035 | 0.348 | 0.925 | 4.276 | 4.333 | 0.176 | 0.185 | |
0.4 | 0.14 | 0.014 | 0.154 | 0.925 | 4.318 | 4.507 | 0.167 | 0.245 | |
0.6 | 0.11 | 0.009 | 0.119 | 0.939 | 4.341 | 3.825 | 0.19 | 0.142 | |
0.8 | 0.109 | 0.013 | 0.121 | 0.939 | 4.242 | 3.99 | 0.178 | 0.207 | |
1 | 0.143 | 0.022 | 0.165 | 0.879 | 4.12 | 4.299 | 0.168 | 0.137 | |
6 | 0 | 0.101 | 0.016 | 0.117 | 0.878 | 4.213 | 4.385 | 0.148 | 0.165 |
0.167 | 0.06 | 0.008 | 0.069 | 0.867 | 4.167 | 3.86 | 0.168 | 0.116 | |
0.333 | 0.042 | 0.006 | 0.048 | 0.889 | 4.19 | 3.392 | 0.195 | 0.115 | |
0.5 | 0.058 | 0.009 | 0.067 | 0.9 | 4.323 | 3.682 | 0.234 | 0.164 | |
0.667 | 0.056 | 0.01 | 0.067 | 0.839 | 4.103 | 3.846 | 0.206 | 0.19 | |
0.833 | 0.104 | 0.014 | 0.118 | 0.897 | 4.261 | 4.23 | 0.188 | 0.207 | |
1 | 0.102 | 0.01 | 0.112 | 0.916 | 4.137 | 3.57 | 0.143 | 0.219 |