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. 2007 Aug 10;3(8):e149. doi: 10.1371/journal.pcbi.0030149

Figure 5. Loglikelihood as a Function of the Steps in the MCMC Chain for the HDV set with and without Parallel Tempering.

Figure 5

With parallel tempering (grey) and without parallel tempering (black). Without parallel tempering, the MCMC chain gets stuck in local minima.