Table 1.
Primer | Sequence a(position, specificity, and polarity) |
First PCR | |
P1 | 5'-TCA CCA TAT TCT TGG GAA CAA GA-3' (nt 2823–2845, universal, sense) |
S1-2 | 5'-CGA ACC ACT GAA CAA ATG GC-3' (nt 685–704, universal, antisense) |
Second PCR | |
Mix A | |
B2 | 5'-GGC TCM AGT TCM GGA ACA GT-3' (nt 67–86, types A to E specific, sense) |
BA1R | 5'-CTC GCG GAG ATT GAC GAG ATG T-3' (nt 113–134, type A specific, antisense) |
BB1R | 5'-CAG GTT GGT GAG TGA CTG GAG A-3' (nt 324–345, type B specific, antisense) |
BC1R | 5'-GGT CCT AGG AAT CCT GAT GTT G-3' (nt 165–186, type C specific, antisense) |
Mix B | |
BD1 | 5'-GCC AAC AAG GTA GGA GCT-3' (nt 2979–2996, type D specific, sense) |
BE1 | 5'-CAC CAG AAA TCC AGA TTG GGA CCA-3' (nt 2955–2978, type E specific, sense) |
BF1 | 5'-GYT ACG GTC CAG GGT TAC CA-3' (nt 3032–3051, type F specific, sense) |
B2R | 5'-GGA GGC GGA TYT GCT GGC AA-3' (nt 3078–3097, types D to F specific, antisense) |
a An "M" represents a nucleotide that could be either an A or a C; a "Y" represents a nucleotide that could be either a C or a T. nt: nucleotide.