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. Author manuscript; available in PMC: 2007 Aug 14.
Published in final edited form as: J Chem Theory Comput. 2006;2(3):696–704. doi: 10.1021/ct600060d

Figure 5. The absolute overlaps, |cosθ|, between eigenvectors obtained for the residue-level and the proton-level models for (a) Type III antifreeze protein rd1 (1ucs), (b) syntenin Pdz2 domain (1r6j), (c) carbohydrate Binding Domain Cbm36 (1w0n), and (d) E. Coli pyrophosphokinase HPPK (1f9y).

Figure 5

The calculations were performed by using optimum cutoffs for each protein for a given model. Proteins are arranged from (a) to (d) according to increasing protein size.