TABLE 1.
List of strains used for the development and validation of the PCR used in this studya
No. | Species | Sero/biotype | Strain | No. | Species | Sero/biotype | Strain | |
---|---|---|---|---|---|---|---|---|
1* | C. jejuni | Penner 1 | CCUG 10935 | |||||
2* | C. jejuni | Penner 2 | CCUG 10936 | |||||
3* | C. jejuni | Penner 3 | CCUG 10937 | |||||
4* | C. jejuni | Penner 4 | CCUG 10938 | |||||
5* | C. jejuni | Penner 5 | CCUG 10959 | |||||
6* | C. coli | Penner 5 | CCUG 10939 | |||||
7* | C. jejuni | Penner 6 | CCUG 12778 | |||||
8* | C. jejuni | Penner 7 | CCUG 10940 | |||||
9* | C. jejuni | Penner 8 | CCUG 16436 | |||||
10* | C. jejuni | Penner 9 | CCUG 10942 | |||||
11* | C. jejuni | Penner 10 | CCUG 10943 | |||||
12* | C. jejuni | Penner 11 | CCUG 10944 | |||||
13* | C. jejuni | Penner 12 | CCUG 17625 | |||||
14* | C. jejuni | Penner 13 | CCUG 10945 | |||||
15* | C. coli | Penner 14 | CCUG 15360 | |||||
16* | C. jejuni | Penner 15 | CCUG 10946 | |||||
17* | C. jejuni | Penner 16 | CCUG 10947 | |||||
18* | C. jejuni | Penner 17 | CCUG 10948 | |||||
19* | C. jejuni | Penner 18 | CCUG 10949 | |||||
20* | C. jejuni | Penner 19 | CCUG 10950 | |||||
21* | C. coli | Penner 20 | CCUG 10951 | |||||
22* | C. jejuni | Penner 21 | CCUG 10952 | |||||
23* | C. jejuni | Penner 22 | CCUG 10953 | |||||
24* | C. jejuni | Penner 23 | CCUG 10954 | |||||
25* | C. coli | Penner 24 | CCUG 10955 | |||||
26* | C. coli | Penner 25 | CCUG 10956 | |||||
27* | C. coli | Penner 26 | CCUG 10957 | |||||
28* | C. jejuni | Penner 27 | CCUG 10958 | |||||
29* | C. coli | Penner 28 | CCUG 10959 | |||||
30* | C. jejuni | Penner 29 | CCUG 15361 | |||||
31* | C. coli | Penner 30 | CCUG 10960 | |||||
32* | C. jejuni | Penner 31 | CCUG 10961 | |||||
33* | C. jejuni | Penner 32 | CCUG 10962 | |||||
34* | C. jejuni | Penner 33 | CCUG 10963 | |||||
35* | C. coli | Penner 34 | CCUG 10964 | |||||
36* | C. jejuni | Penner 35 | CCUG 10965 | |||||
37* | C. jejuni | Penner 36 | CCUG 10966 | |||||
38* | C. jejuni | Penner 37 | CCUG 10967 | |||||
39* | C. jejuni | Penner 38 | CCUG 10968 | |||||
40* | C. coli | Penner 39 | CCUG 10969 | |||||
41* | C. jejuni | Penner 40 | CCUG 10970 | |||||
42* | C. jejuni | Penner 41 | CCUG 10971 | |||||
43* | C. jejuni | Penner 42 | CCUG 12782 | |||||
44* | C. jejuni | Penner 43 | CCUG 12783 | |||||
45* | C. jejuni | Penner 44 | CCUG 14567 | |||||
46* | C. jejuni | Penner 45 | CCUG 17753 | |||||
47* | C. coli | Penner 46 | CCUG 15362 | |||||
48* | C. coli | Penner 47 | CCUG 17715 | |||||
49* | C. coli | Penner 48 | CCUG 17754 | |||||
50* | C. coli | Penner 49 | CCUG 17755 | |||||
51* | C. jejuni | Penner 50 | CCUG 12790 | |||||
52* | C. coli | Penner 51 | CCUG 12791 | |||||
53* | C. jejuni | Penner 52 | CCUG 12792 | |||||
54* | C. jejuni | Penner 53 | CCUG 15013 | |||||
55* | C. coli | Penner 54 | CCUG 12794 | |||||
56* | C. jejuni | Penner 55 | CCUG 12795 | |||||
57* | C. coli | Penner 56 | CCUG 14537 | |||||
58* | C. jejuni | Penner 57 | CCUG 14538 | |||||
59* | C. jejuni | Penner 58 | CCUG 14539 | |||||
60* | C. coli | Penner 59 | CCUG 14540 | |||||
61* | C. jejuni | Penner 60 | CCUG 14541 | |||||
62* | C. coli | Penner 61 | CCUG 24865 | |||||
63* | C. jejuni | Penner 62 | CCUG 24866 | |||||
64* | C. jejuni | Penner 63 | CCUG 24867 | |||||
65* | C. jejuni | Penner 64 | CCUG 24868 | |||||
66* | C. jejuni | Penner 65 | CCUG 24869 | |||||
67** | C. jejuni | Type strain | CCUG 11284 | |||||
68* | C. jejuni | C. jejunib | CCUG 24567 | |||||
69* | C. jejuni | C. jejunib | CCUG 18265 | |||||
70* | C. jejuni | C. jejunib | CCUG 18266 | |||||
71* | C. jejuni | C. jejunib | CCUG 26155 | |||||
72* | C. jejuni | C. jejunib | CCUG 26152 | |||||
73* | C. jejuni | C. jejunib | SSI 5384 | |||||
74** | C. coli | Type strain | CCUG 11283 | |||||
75* | C. lari | Type strain | CCUG 23947 | |||||
76** | C. lari | NARTCc | CCUG 15035 | |||||
77** | C. lari | NARTC | CCUG 12774 | |||||
78** | C. lari | NARTC | CCUG 23949 | |||||
79* | C. lari | NARTC | CCUG 19528 | |||||
80* | C. lari | NARTC | CCUG 23948 | |||||
81* | C. lari | NARTC | SVS 98-40052 | |||||
82* | C. lari | UPTCd | CCUG 20707 | |||||
83* | C. lari | UPTC | CCUG 18267 | |||||
84* | C. lari | UPTC | CCUG 22395 | |||||
85* | C. lari | UPTC | CCUG 18294 | |||||
86* | C. lari | UPTC | CCUG 22396 | |||||
87* | C. lari | UPTC | LU 6/3BW1 | |||||
88* | C. lari | UPTC | LU 21/12OC3 | |||||
89* | C. lari | UPTC | LU 16/1BTG4 | |||||
90* | C. lari | UPTC | LU 18/3BTG8 | |||||
91* | C. lari | UPTC | LU 21/12LW18 | |||||
92* | C. lari | UPTC | LU 16/1OC3 | |||||
93 | C. jejuni | 2 | 7231127-3 | |||||
94 | C. jejuni | 4 complex | 7231127-2 | |||||
95 | C. coli | 46 | 9831503-2 | |||||
96 | C. coli | 59 | 9831091-1 | |||||
97 | C. hyointestinalis | 9930731-1 | ||||||
98 | C. jejuni | 35 | 7230701-6 | |||||
99 | C. jejuni | 23,36 | 7230127-3 | |||||
100 | C. coli | 51 | 7231059-1 | |||||
101 | C. coli | 5 | 7231058-1 | |||||
102 | C. hyointestinalis | 9930111-1 | ||||||
103 | C. jejuni | 11 | 99042253-4 | |||||
104 | C. jejuni | 31 | 9904313-14 | |||||
105 | C. coli | 5 | 9904602-19 | |||||
106 | C. coli | 46 | 9904253-1 | |||||
107 | C. jejuni | 29 | 7231125-2 | |||||
108 | C. jejuni | 5 | 7231120-5 | |||||
109 | C. jejuni | 19 | 723723-2 | |||||
110 | C. jejuni | 4 complex | 9904253-5 | |||||
111 | C. jejuni | 6,7 | 9930116-6 | |||||
112 | C. coli | 30 | 7230141-6 | |||||
113 | C. coli | 46 | 7231033-1 | |||||
114 | C. coli | NT | 9631023-2 | |||||
115 | C. coli | 59 | 7231135-2 | |||||
116 | C. coli | 48 | 9631038-4 | |||||
117 | C. hyointestinalis | 7230324-3 | ||||||
118 | C. hyointestinalis | 9731034-3 | ||||||
119 | H. pullorum-like | 9831306-5 | ||||||
120 | C. lari | 9831299-3 | ||||||
121 | H. pullorum-like | 9831276-8 | ||||||
122** | C. upsaliensis | Type strain | CCUG 14913 | |||||
123** | C. upsaliensis | CCUG 33890 | ||||||
124** | C. upsaliensis | CCUG 20818 | ||||||
125** | C. upsaliensis | CCUG 23017 | ||||||
126** | C. upsaliensis | CCUG 19559 | ||||||
127** | C. helveticus | Type strain | CCUG 30682 | |||||
128** | C. helveticus | CCUG 34016 | ||||||
129** | C. helveticus | CCUG 30563 | ||||||
130** | C. helveticus | CCUG 30564 | ||||||
131** | C. helveticus | CCUG 30565 | ||||||
132** | C. helveticus | CCUG 30566 | ||||||
133** | C. helveticus | CCUG 30683 | ||||||
134** | C. helveticus | CCUG 34042 | ||||||
135 | C. hyointestinalis | Type strain | CCUG 14169 | |||||
136 | C. lanienae | Type strain | NCTC 13004 | |||||
137 | C. mucosalis | Type strain | CCUG 6822 | |||||
138 | C. fetus | Type strain | CCUG 6823 | |||||
139 | C. concisus | Type strain | CCUG 13144 | |||||
140 | C. curvus | Type strain | CCUG 13146 | |||||
141 | C. showae | Type strain | CCUG 30254 | |||||
142 | C. rectus | Type strain | CCUG 20446 | |||||
143 | C. gracilis | Type strain | CCUG 27720 | |||||
144 | Arcobacter butzleri | Type strain | CCUG 30483 | |||||
145 | Helicobacter pylori | Rigsh. 15893 | ||||||
146 | H. pullorum | Type strain | CCUG 33837 | |||||
147 | Escherichia coli | JEO 908149 | ||||||
148 | L. monocytogenes | JEO 2268-179 | ||||||
149 | Y. enterocolitica | JH2 O:3 | ||||||
150 | S. enterica | CCUG 31969 |
*, strains used for testing the four published PCR methods; **, strains used in the preliminary study for identifying the primer pair with the best selectivity.
C. jejuni, subsp. doylei strain.
NARTC, nalidixic acid-resistant thermophilic Campylobacter.
UPTC, urease-positive thermophilic Campylobacter.