TABLE 3.
Closest match of cloned DGGE bands to known species
| Site and clone name | Best match to known species in RDP | Sab score |
|---|---|---|
| SB-1 | Xanthomonas hyacinthi LMG 739 (T) | 0.692 |
| SB-2 | Rhodoferax unidentified proteobacterium arc53 | 0.949 |
| SB-3 | Matsuebacter chitosanotabidus | 0.866 |
| SB-6 | Leptothrix discophora strain SS-1 ATCC 43182 | 0.877 |
| SB-8 | Rhodobacter sphaeroides IFO 12203 | 0.914 |
| SB-13 | Dictyoglomus thermophilum strain H-6-12 DSM 3960 (T) | 0.501 |
| SB-14 | Rhizobium sp. strain CIAM 2927 | 0.763 |
| GC-1 | Aquabacterium commune strain B8 | 0.912 |
| GC-2 | Nitrospira cf. moscoviensis strain SBR2046 | 0.887 |
| GC-3 | Uncultured Pirellula clone 5H12 | 0.704 |
| GC-4 | Hyphomicrobium denitrificans strain X DSM 1869 (T) | 0.765 |
| GC-7 | Thiobacillus aquaesulis | 0.798 |
| GC-8 | Lutelmonas mephitis strain B 1953/27.1 | 0.809 |
| GC-9 | Rhodococcus erythropolis DSM 4318 | 0.993 |
| CF-1 | Sphingomonas subterranea IFO 16086 | 0.919 |
| CF-2 | Calothrix desertica PCC 7102 | 0.713 |
| CF-3 | Desulfobulbus rhabdoformis 16S rRNA gene, complete | 0.541 |
| CF-5 | Bacterial species DNA for 16S rRNA gene (strain IFAM 2074) | 0.699 |
| CF-6 | Methylocystis parvus | 0.711 |
| CF-7 | Acidobacterium subdivision Environmental RB group (clone RB30) | 0.896 |
| CF-8 | Hydrogenophaga palleronii strain S1 DSM 63 (T) | 0.915 |
| LB-1 | Leptothrix strain MBIC3364 | 0.887 |
| LB-2 | Nitrospina subdivision Environmental clone 2027 group (clone 11-25) | 0.725 |
| LB-3 | Chamaesiphon subglobosus PCC 7430 | 0.741 |
| LB-4 | Nostoc strain GSV224 | 0.941 |
| LB-5 | Geobacter sp. strain JW-3 | 0.973 |
| LB-8 | Azospirillum doebereinerae strain 63f | 0.622 |
| LB-9 | Aquabacterium commune strain B8 | 0.922 |
| LB-11 | Unidentified eubacterium from the Amazon 16S rRNA gene | 0.815 |
| BH-1 | Unidentified eubacterium from the Amazon 16S rRNA gene | 0.665 |
| BH-2 | Rhizobium strain CJ5, 24N, USDA 3398 | 0.845 |
| BH-3 | Planctomyces sp. strain Schlesner 642 | 0.741 |
| BH-6 | Rhodoferax unidentified proteobacterium arc53 | 0.904 |
| BH-8 | Pirellula staleyi | 0.637 |
| BH-10 | Pelobacter carbinolicus | 0.624 |
| BH-11 | Janibacter thuringensis | 0.923 |
| BH-12 | Uncultured eubacterium H1.2.f isolated from a deep subsurface paleosol | 0.534 |
| BH-13 | Acidovorax strain G8B1 | 0.842 |
| RC-1 | Acidovorax strain G8B1 | 0.842 |
| RC-2 | Comamonas sp. 16S rRNA gene, isolate 158 | 0.881 |
| RC-3 | Rhodoferax unidentified proteobacterium arc53 | 0.889 |
| RC-4 | Leptothrix strain MBIC3364 | 0.931 |
| RC-5 | Xanthomonas melonis LMG 8670 (T) | 0.894 |
| RC-6 | Frateuria aurantia IFO 3245 (T) | 0.841 |
| RC-7 | Mount Coot-tha region (Brisbane, Australia) 5- to 10-cm-depth soil DNA clone MC 26 | 0.719 |
| RC-9 | Aquabacterium commune strain B8 | 0.942 |
| RC-10 | Hyphomicrobium denitrificans strain X DSM 1869 (T) | 0.846 |