Table 3.
PA flagged probesets with > 8 fold differential expression according to MAS5 and less than 2 fold according to RMA.
| Probeset ID | f.c. | ttest | mcf7 | mcf10a | gene name |
| 1553494_at | 5.03 ± 0.59 | 0.00 | 4.05 | -0.97 | TDH |
| 210833_at | 4.69 ± 0.53 | 0.00 | 4.37 | -0.32 | PTGER3 |
| 1564699_at | 4.56 ± 0.67 | 0.01 | 4.10 | -0.46 | C5orf4 |
| 222136_x_at | 4.04 ± 0.54 | 0.00 | 7.62 | 3.58 | ZNF43 |
| 1558687_a_at | 3.86 ± 0.67 | 0.00 | 4.23 | 0.38 | NA |
| 228811_at | 3.84 ± 0.56 | 0.00 | 4.33 | 0.48 | PLA2G5 |
| 214761_at | 3.59 ± 0.56 | 0.00 | 4.63 | 1.04 | ZNF423 |
| 207886_s_at | 3.58 ± 0.25 | 0.02 | 4.74 | 1.17 | CALCR |
| 217681_at | 3.40 ± 1.28 | 0.00 | 5.66 | 2.26 | WNT7B |
| 210100_s_at | 3.38 ± 0.98 | 0.00 | 6.48 | 3.11 | ABCA2 |
| 205501_at | 3.34 ± 1.23 | 0.04 | 3.58 | 0.25 | NA |
| 243580_at | 3.29 ± 0.75 | 0.01 | 4.61 | 1.32 | GNA14 |
| 214191_at | 3.26 ± 0.68 | 0.00 | 5.07 | 1.81 | ICA1 |
| 243650_at | 3.20 ± 1.51 | 0.03 | 4.96 | 1.76 | PLEKHH2 |
| 231795_at | 3.19 ± 1.08 | 0.00 | 4.48 | 1.29 | NA |
| 230917_at | 3.16 ± 1.19 | 0.03 | 4.34 | 1.18 | NA |
| 228090_at | 3.13 ± 0.52 | 0.01 | 5.86 | 2.73 | NMNAT3 |
| 216061_x_at | 3.13 ± 0.63 | 0.00 | 6.35 | 3.22 | PDGFB |
| 243804_at | 3.12 ± 0.57 | 0.01 | 4.12 | 1.00 | FLJ32642 |
| 204778_x_at | 3.09 ± 1.25 | 0.01 | 6.09 | 3.00 | HOXB7 |
| 241744_x_at | 3.08 ± 0.52 | 0.04 | 3.63 | 0.54 | NA |
| 226086_at | 3.05 ± 0.49 | 0.00 | 4.18 | 1.13 | SYT13 |
| 1569701_at | 3.03 ± 0.47 | 0.04 | 3.91 | 0.89 | PER3 |
| 225163_at | 3.01 ± 0.72 | 0.01 | 5.05 | 2.03 | FRMD4A |
| 204885_s_at | -3.22 ± 0.40 | 0.01 | 2.70 | 5.92 | MSLN |
| 214587_at | -3.27 ± 0.28 | 0.03 | 0.64 | 3.92 | COL8A1 |
| 233792_at | -3.31 ± 0.61 | 0.00 | 0.51 | 3.82 | NA |
| 205964_at | -3.44 ± 0.45 | 0.02 | 1.22 | 4.66 | ZNF426 |
| 219983_at | -3.47 ± 0.27 | 0.00 | 0.73 | 4.20 | HRASLS |
| 239955_at | -3.47 ± 0.84 | 0.00 | 0.48 | 3.95 | NA |
| 1563693_at | -3.50 ± 0.30 | 0.00 | 0.13 | 3.63 | NA |
| 1553574_at | -3.59 ± 1.10 | 0.00 | -0.20 | 3.39 | IFNE1 |
| 219058_x_at | -3.70 ± 1.22 | 0.01 | 2.46 | 6.16 | LCN7 |
| 228821_at | -3.75 ± 0.43 | 0.01 | -0.17 | 3.58 | ST6GAL2 |
| 1564796_at | -3.87 ± 0.28 | 0.01 | 0.80 | 4.68 | EMP1 |
| 225372_at | -4.07 ± 0.39 | 0.00 | 0.74 | 4.82 | C10orf54 |
| 1556773_at | -4.14 ± 1.39 | 0.00 | 0.10 | 4.24 | PTHLH |
| 1562648_at | -4.17 ± 0.84 | 0.00 | 0.10 | 4.28 | KIAA1212 |
| 1558512_at | -4.29 ± 1.38 | 0.00 | -0.32 | 3.97 | NA |
| 1553654_at | -4.45 ± 0.70 | 0.00 | -0.97 | 3.48 | SYT14 |
f.c.: log2 fold change, ± standard error. t-test: t-test p-score between replicates. MCF7, MCF10a: log2 mean expression level. Probesets marked in bold type were validated by real time PCR.