Table 1.
HERV-E copies providing ESTs in placenta
| HERV-E | Chromosome: coordinates | Strand | Simple ESTs | Chimeric ESTs | Total ESTs | Comments | |
|---|---|---|---|---|---|---|---|
| Likely | Solo LTR | 1: 89420430–89421200 | − | 0 | 1 | 1 | |
| Full length | 1: 166098952–166105765 | + | 1 | 2 | 3 | Alternative promoter of IQWD1 | |
| 3′ deleted | 2: 34755763–34756702 | + | 0 | 1 | 1 | ||
| Solo LTR | 2: 96948142–96948605 | + | 0 | 1 | 1 | ||
| Full length | 7: 136597798–136604133 | − | 0 | 3 | 3 | LTR-PTN | |
| Full length | 13: 77442456–77448210 | − | 0 | 3 | 3 | LTR-EBR | |
| *Full length | 19: 58093589–58099917 | − | 2 | 0 | 2 | ||
| Full length | 21: 43225142–43230724 | + | 2 | 0 | 2 | ||
| Solo LTR | X: 3863806–3864286 | + | 1 | 0 | 1 | ||
| Full length | X: 10512832–10518380 | − | 3 | 2 | 5 | LTR-MID1 | |
| Possibly | Full length | 1: 204449081–204455474 | − | 2 | 0 | 2 | |
| **Full length | 2: 188083461–188090051 | + | 5 | 0 | 5 | LTR-II | |
| Full length | 6: 35074115–35080062 | + | 2 | 0 | 2 | LTR-VI | |
| Full length | 6: 111712066–111718525 | − | 1 | 0 | 1 | ||
| Full length | 10: 73369141–73376272 | + | 2 | 0 | 2 | ||
| Full length | 17: 23581671–23590492 | − | 11 | 0 | 11 | ||
| Full length | 17: 38565788–38573241 | − | 1 | 0 | 1 | ||
| 3′ deleted | 19: 63018482–63019644 | + | 1 | 0 | 1 | ||
| Full length | 20: 24847861–24861663 | + | 9 | 0 | 9 | ||
| Unlikely | Full length | 1: 1337494–1344095 | − | 0 | 2 | 2 | Genomic + 5′LTR |
| **Full length | 2: 188083461–188090051 | + | 0 | 4 | 4 | LTR-II internal region spliced into gene exons | |
| Internal sequence | 10: 15072826–15076892 | − | 0 | 1 | 1 | Flanking + internal sequence | |
| 5′ deleted | 11: 3451334–3459517 | − | 0 | 2 | 2 | Internal sequence + flanking | |
| Internal sequence | 13: 44848741–44856042 | − | 0 | 3 | 3 | HERVE duplications – gene exons | |
| Solo LTR | 16: 29617072–29617563 | + | 1 | 2 | 3 | Flanking + LTR | |
| *Full length | 19: 58093589–58099917 | − | 0 | 1 | 1 | Flanking + 5′LTR | |
| Solo LTR | 19: 60156353–60156881 | − | 0 | 1 | 1 | Flanking + 5′LTR, alternative prom NALP2 | |
| Internal sequence | 21: 43236635–43249084 | − | 1 | 0 | 1 | Internal sequence |
* and ** are proviruses that appear in two different categories because they provide two types of ESTs.