TABLE 3.
TRNa | Marker size (bp) detected by the indicated method for the following MLVA marker locus:
|
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V2A
|
V4
|
V5
|
V6
|
V7
|
V9
|
V10
|
||||||||
SEQb | DGE | SEQ | DGE | SEQ | DGE | SEQ | DGE | SEQ | DGE | SEQ | DGE | SEQ | DGE | |
2 | 268 | 263 | 117 | 117 | —c | — | — | — | — | — | 103 | 101 | — | — |
3 | — | — | — | — | — | — | — | — | 183 | 179 | 115 | 113 | 108 | 106 |
4 | — | — | 131 | 131 | 194 | 191 | — | — | 189 | 185 | 127 | 125 | — | — |
5 | 286 | 281 | 138 | 137 | 200 | 197 | 188 | 184 | 195 | 192 | 139 | 137 | — | — |
6 | 292 | 288 | 145 | 144 | 206 | 203 | 194 | 190 | 201 | 198 | 151 | 148 | 132 | 130 |
7 | 298 | 294 | 152 | 151 | 212 | 210 | 200 | 196 | 207 | 204 | — | — | 140 | 138 |
8 | 304 | 299 | 159 | 158 | 218 | 216 | 206 | 202 | 213 | 210 | 175 | 171 | 148 | 146 |
9 | 310 | 305 | 166 | 165 | 224 | 222 | 212 | 208 | 219 | 216 | 187 | 182 | 156 | 154 |
10 | 316 | 312 | 173 | 172 | 230 | 227 | 218 | 214 | 225 | 222 | — | — | 164 | 162 |
11 | 322 | 317 | — | — | 236 | 234 | 224 | 220 | 231 | 228 | — | — | 172 | 170 |
12 | 328 | 323 | — | — | 242 | 239 | 230 | 226 | 237 | 234 | — | — | 180 | 178 |
13 | 334 | 328 | — | — | 248 | 245 | — | — | 243 | 240 | — | — | 188 | 186 |
14 | 340 | 333 | — | — | 254 | 251 | 242 | 238 | 249 | 246 | — | — | 196 | 195 |
15 | 348 | 338 | — | — | — | — | 248 | 244 | 255 | 252 | — | — | 204 | 202 |
16 | 352 | 343 | — | — | 266 | 263 | 254 | 249 | — | — | — | — | — | — |
17 | 358 | 350 | — | — | 272 | 268 | 260 | 255 | 267 | 264 | — | — | 220 | 217 |
18 | — | — | — | — | 278 | 274 | — | — | — | — | — | — | — | — |
19 | — | — | — | — | 284 | 279 | — | — | — | — | — | — | — | — |
20 | — | — | — | — | — | — | — | — | — | — | — | — | 244 | 241 |
TNR, tandem repeat number.
SEQ, nucleotide sequence analysis.
—, tandem repeat numbers not observed in this study.