Table 2. The distances between PLP and protein atoms in known MGL structures.
* represents residues from the other subunit of a catalytic dimer.
C. freundii MGL (PDB code http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1y4i) | T. vaginalis MGL (PDB code http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1e5f) | P. putida MGL (PDB code http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ukj) | ||||||
---|---|---|---|---|---|---|---|---|
Residue | PLP atom | Distance (Å) | Residue | PLP atom | Distance (Å) | Residue | PLP atom | Distance (Å) |
Tyr58* OH | O1P | — | Tyr56* OH | O1P | 2.42 | Tyr59* OH | O2P | 2.45 |
Arg60* NE | O3P | — | Arg58* NE | O3P | 2.59 | Arg61* NE | O3P | 3.08 |
Arg60* NH2 | O2P | 2.97 | Arg58* NH2 | O1P | 2.93 | Arg61* NH2 | O2P | 3.03 |
Gly88 N | O1P | 2.71 | Gly86 N | O2P | 2.81 | Gly89 N | O1P | 2.82 |
Gly88 N | O3P | 3.16 | Gly86 N | O3P | 3.10 | Gly89 N | O3P | 3.04 |
Ile89 N | O3P | 2.92 | Met87 N | O3P | 2.87 | Met90 N | O3P | 2.80 |
Asp185 OD2 | N1 | 2.73 | Asp184 OD2 | N1 | 2.64 | Asp186 OD2 | N1 | 2.70 |
Ser207 OG | O1P | 2.82 | Ser206 OG | O1P | 2.81 | Ser208 OG | O1P | 3.05 |
Ser207 OG | O4P | 2.92 | Ser206 OG | O4P | 2.92 | Ser208 OG | O4P | 2.77 |
Thr209 OG1 | O1P | 2.67 | Thr208 OG1 | O2P | 2.78 | Thr210 OG1 | O1P | 2.71 |