Table 2.
Program | CPU (s) | CPU/Align | Rel. to FAST | Align Missing |
Dali | 12895 | 6.2 | 20 | 121 |
SRUCTAL | 3703 | 1.8 | 5 | 0 |
GASH | 3197 | 1.5 | 5 | 4 |
RASH | 1424 | .69 | 2 | 0 |
FAST | 645 | .31 | 1 | 3 |
The total CPU usage for 5 programs was computed over the geometric test set of 2,071 query-template pairs. The last column lists the number of query-template pairs for which no alignment was obtained by the method.