TABLE 1.
List of parameters
Parameter | Value | Unit |
---|---|---|
Channel flux coefficient P | 6.32 × 106 | nm s−1 |
Single channel radius Rs | 6 | nm |
Pump flux coefficient Pp | 40000 | nm μM s−1 |
Pump dissociation coefficient Kd | 0.2 | μM |
Ca2+ concentration in ER, E | 700 | μM |
Ca2+ concentration in cytosol at rest, c0 | 0.05 | μM |
Leak flux coefficient ![]() |
3.36 | nm s−1 |
Diffusion coefficient D of free cytosolic Ca2+ | 200 | μm2 s−1 |
Diffusion coefficient Dm of mobile buffer | 200 | μm2 s−1 |
Diffusion coefficient Ddye of dye buffer | 15.0 | μm2 s−1 |
On-rates of fast buffers: | ||
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50 | (μM s)−1 |
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5 | (μM s)−1 |
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150 | (μM s)−1 |
Dissociation constants of buffers ![]() |
||
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2 | μM |
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0.15 | μM |
![]() |
2 | μM |
Total concentrations of buffers: | ||
Bs | 80 | μM |
Bm | 300 | μM |
Bdye | 40 | μM |
Subunit kinetics, note bi = aidi | ||
IP3 binding | ||
a1, a3 | 80 | (μM s)−1 |
d1 | 0.008 | μM |
d3 | 0.5 | μM |
Inhibiting, with IP3 | ||
a2 | 0.04 | (μM s)−1 |
d2 | 12 | μM |
Inhibiting, without IP3 | ||
a4 | 0.4 | (μM s)−1 |
d4 | 0.192 | μM |
Activating | ||
a5 | 15 | (μM s)−1 |
d5 | 0.8 | μM |
Open conformational transition | ||
a0 | 550 | μM |
b0 | 80 | μM |