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. 2007 Sep 12;2(9):e878. doi: 10.1371/journal.pone.0000878

Table 1. Oligonucleotide primers used for kRT-PCR.

Gene Primers Primer sequence (5′ to 3′) Gene Location Base pair size
pmpA pmpA-3 a TGCTAGGGAAGATGTTGCAAATAG 1434–1457 51
pmpA-4 a TGAACGGGTTGGTTAAAAATCG 1484–1463
pmpB pmpB-5 a CGACTATCAGCAAAAACACTGCTAA 2120–2144 102
pmpB-6 a TAGCGGAGTTCTCAGAGATATTCAGTT 2221–2195
pmpC pmpC-11 a TTAGTGCTCCCTACAGACTCATCAA 4150–4174 56
pmpC-12 a CCCGTCAGTACTATTTTCTGAGCTT 4205–4181
pmpD pmpD-3 a GCGTGTCGCTCTGGAAAATAAT 4455–4476 51
pmpD-4 a ACTGTGCTGAAGTAAGAACTCCATTC 4505–4480
pmpE pmpE-1 a CATATGCGCTCTTCCGGATAC 2140–2160 51
pmpE-2 a GTGTGTCTGCCCTGCTATCATC 2190–2169
pmpF pmpF-5 a TCCTATGTTTGATCGCATTGCT 2520–2541 69
pmpF-6 a CTCCGCATGTTATGTGTTCCA 2588–2566
pmpG pmpG-1 a , b TGGGTTTCTGGAGTTTCGAATT 2221–2242 51
pmpG-2 a , b ACCTAAAGCATCGCGGTCAT 2271–2252
pmpG-3 a TGTGGCCCTGTACAATTCTTAGG 1165–1187 52
pmpG-4 a AAATCGCTCCACCATCATTAGC 1216–1195
pmpH pmpH-15 a TGCATACGCAGTATTTTAATGACAAA 2486–2511 61
pmpH-16 a TGCCAATGACATTTCGAATGAT 2546–2525
pmpI pmpI-1 a GGAGAAGTGTGCGCATCGAT 2176–2195 51
pmpI-2 a GAACAGTCCGGAACCATTGG 2226–2207
ompA OmpA-9 c TGCCGCTTTGAGTTCTGCTT 33–52 75
OmpA-10 c GTCGATCATAAGGCTTGGTTCAG 108–86
16SrRNA 16SRNA-9 d GCGAAGGCGCTTTTCTAATTTAT 734–756 76
16SRNA-10 d CCAGGGTATCTAATCCTGTTTGCT 809–786
a

Primers designed based on each pmp sequence of reference strains E/Bour and L2/434 [12].

b

Primers designed only for strain L2.

c

Primers designed based on the ompA sequence of reference strains E/Bour and L2/434 (GenBank Accession No. X52557 and M14738, respectively).

d

Primers designed based on the 16SrRNA sequence of reference strains E/Bour and L2/434 (GenBank Accession No. D85722 and U68443, respectively).