Table 1. Oligonucleotide primers used for kRT-PCR.
Gene | Primers | Primer sequence (5′ to 3′) | Gene Location | Base pair size |
pmpA | pmpA-3 a | TGCTAGGGAAGATGTTGCAAATAG | 1434–1457 | 51 |
pmpA-4 a | TGAACGGGTTGGTTAAAAATCG | 1484–1463 | ||
pmpB | pmpB-5 a | CGACTATCAGCAAAAACACTGCTAA | 2120–2144 | 102 |
pmpB-6 a | TAGCGGAGTTCTCAGAGATATTCAGTT | 2221–2195 | ||
pmpC | pmpC-11 a | TTAGTGCTCCCTACAGACTCATCAA | 4150–4174 | 56 |
pmpC-12 a | CCCGTCAGTACTATTTTCTGAGCTT | 4205–4181 | ||
pmpD | pmpD-3 a | GCGTGTCGCTCTGGAAAATAAT | 4455–4476 | 51 |
pmpD-4 a | ACTGTGCTGAAGTAAGAACTCCATTC | 4505–4480 | ||
pmpE | pmpE-1 a | CATATGCGCTCTTCCGGATAC | 2140–2160 | 51 |
pmpE-2 a | GTGTGTCTGCCCTGCTATCATC | 2190–2169 | ||
pmpF | pmpF-5 a | TCCTATGTTTGATCGCATTGCT | 2520–2541 | 69 |
pmpF-6 a | CTCCGCATGTTATGTGTTCCA | 2588–2566 | ||
pmpG | pmpG-1 a , b | TGGGTTTCTGGAGTTTCGAATT | 2221–2242 | 51 |
pmpG-2 a , b | ACCTAAAGCATCGCGGTCAT | 2271–2252 | ||
pmpG-3 a | TGTGGCCCTGTACAATTCTTAGG | 1165–1187 | 52 | |
pmpG-4 a | AAATCGCTCCACCATCATTAGC | 1216–1195 | ||
pmpH | pmpH-15 a | TGCATACGCAGTATTTTAATGACAAA | 2486–2511 | 61 |
pmpH-16 a | TGCCAATGACATTTCGAATGAT | 2546–2525 | ||
pmpI | pmpI-1 a | GGAGAAGTGTGCGCATCGAT | 2176–2195 | 51 |
pmpI-2 a | GAACAGTCCGGAACCATTGG | 2226–2207 | ||
ompA | OmpA-9 c | TGCCGCTTTGAGTTCTGCTT | 33–52 | 75 |
OmpA-10 c | GTCGATCATAAGGCTTGGTTCAG | 108–86 | ||
16SrRNA | 16SRNA-9 d | GCGAAGGCGCTTTTCTAATTTAT | 734–756 | 76 |
16SRNA-10 d | CCAGGGTATCTAATCCTGTTTGCT | 809–786 |