Table 1.
Variable sites identified in ancient and modern chicken samples
| Sample no. | Variable site location |
GenBank accession no. | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 196 | 214 | 222 | 225 | 278 | 293 | 303 | 331 | 339 | ||
| Reference sequence | T | T | T | C | A | C | T | G | A | NC001323 |
| CHLARA001 | T | C | C | C | A | C | T | G | A | EF535241 |
| Ton_HB | T | C | C | C | A | C | T | G | A | EF535237 |
| AMSFTF001 | T | C | C | C | A | C | T | G | A | EF535240 |
| Ton_TD | C | C | C | C | A | C | T | G | A | EF535236 |
| NIUPKI009 | C | C | C | C | A | C | T | G | A | EF535239 |
| HWIKUA001 | C | C | C | C | A | C | T | G | A | EF535238 |
| PAQANA011 | Y* | C | C | C | A | C | T | G | A | EF535246 |
| PAQANA004 | T | T | C | C | G | T | C | G | G | EF535242 |
| PAQANA006 | T | T | C | C | G | T | C | G | G | EF535243 |
| PAQANA009 | T | T | C | C | G | T | C | G | G | EF535244 |
| PAQANA010 | T | T | C | C | G | T | C | G | G | EF535245 |
| PAQHAN001 | T | T | C | C | G | T | C | C | G | EF535247 |
| Araucana feather 1 | T | C | C | T | A | C | T | G | A | EF535248 |
| Araucana feather 2 | T | T | T | C | A | C | T | G | A | EF535249 |
| Miyake Lombok 1 | T | T | C | C | G | C | C | G | G | AB009437, AB009438 |
| Miyake Lombok 2 | T | T | C | C | G | C | C | G | A | AB009436 |
| Miyake Vietnam 1 | C | T | C | C | A | C | T | G | A | AB009435 |
| Miyake Vietnam 2 | T | T | C | C | G | C | T | G | A | AB009434 |
| Miyake Thailand 1 | T | T | C | C | G | C | C | G | A | AB009432 |
| Miyake Thailand 2 | T | T | C | C | G | C | C | G | G | AB009441 |
| Miyake Philippines | T | T | C | C | G | C | C | G | A | AB009433 |
| Liu Yunnan | T | T | C | C | G | C | T | G | A | AF512163, AF392339 |
Numbering based on Desjardins and Morais (42).
*Y, ambiguous site that can be either a C or a T.