Table 1.

Results of simulated annealing for eight targets

Protein	Best memory				Predicted structure EF-15		Predicted structure EF
	NRES	Q	%I	rms*†	Q	rms*	Q	rms*
1r69	63	0.89	52.4	0.85	0.73	2.17	0.68	6.08
1utg	70	0.90	55.7	0.78	0.31	8.30	0.53	6.58
3icb	75	0.52	28.0	3.28	0.57	3.51	0.60	3.38
5pal	109	0.89	44.4	0.85	0.62	3.69	0.77	2.33
1ccr	112	0.87	57.4	1.39	0.79	1.96	0.80	2.4
1res	43	0.48	16.3	13.02	0.33	6.84	0.42	7.77
1hyp	75	0.43	22.7	5.46	0.32	8.14	0.29	12.13
5cyt(R)	103	0.75	34.3	1.56	0.32	9.99	0.44	5.94

The Protein Data Bank designation of the protein is listed in column 1. The next four columns list the number of residues (NRES), the degree of sequence identity of the target with the most homologous structure in the memory set as well as the Q-score and rms deviation. Columns 6 and 7 give the Q-score and rms deviation for predicted structures using the EF-15 (γ_n=3) values with respect to the correct structure, and the last two columns given the results for using EF (γ_n=2 values). 

^*Based on C_α atoms. 

^†Based on alignment to homolog.