Table 2.
De novo early steps | De novo signature enzymes | De novo late steps | PABA synthesis | |||||||||||
Organism | GCYH-I | DHNTPase | DHNA | DHPS | HPPK | DHFS | DHFR | PabAabc | ||||||
FolE | FolE2 | FolQ | FolQ2* | FolB | FolB2* | FolP | FolK | FolC | FolC2 | FolA | FolM | Dhfr2 | ||
Escherichia coli K12 | + | - | ? | ? | + | + | + | + | + | - | + | + | - | + |
Staphylococcus aureus | - | + | ? | ? | + | + | + | + | + | - | + | - | - | + |
Chlamydia trachomatis | ? | ? | ? | ? | + | + | + | + | - | + | + | - | - | ? |
Lactococcus lactis | + | - | + | - | + | + | + | + | + | + | - | - | ? | |
Parachlamydia sp. UWE25 | + | +# | - | +# | + | + | + | + | - | - | + | - | + | |
Helicobacter pylori | + | - | ? | ? | + | + | +# | + | + | - | - | - | +# | + |
Prochlorococcus marinus | + | - | ? | ? | + | + | + | + | + | - | ? | ? | ? | + |
Clostridium perfringens | + | - | - | + | + | + | + | + | + | - | + | - | - | + |
Rickettsia felis | + | - | ? | ? | ? | ? | + | + | + | - | + | - | - | ? |
Geobacter metallireducens | - | + | ? | ? | - | + | + | + | + | - | + | - | - | + |
Mycobacterium leprae | + | - | ? | ? | + | + | FolP1 | + | + | - | + | - | - | + |
FolP2 | ||||||||||||||
Shewanella denitrificans | + | - | ? | ? | + | + | + | FolK1 | + | + | + | - | + | |
FolK2 | ||||||||||||||
Xylella fastidiosa | + | + | ? | ? | + | - | + | FolK1 | + | - | + | + | - | + |
FolK2 |
* Prediction not experimentally verified; # Fused proteins; Underlined and bold: physical clustering; (+): gene identified; (-): no identified gene; (?): predicted missing gene.