Table 1.
Frequencies of signature nucleotides identified in the 5'NCR of type 1 HCV strains isolated in South Americaa
Frequency of query nucleotides | Frequency of background nucleotides | |||||||
Positionb: | 107 | 243 | 247 | 248 | 107 | 243 | 247 | 248 |
Nucleotide: | A | A | T | C | G | G | C | T |
Among query set: | 0.947 | 0.947 | 0.947 | 0.947 | 0.053 | 0.053 | 0.053 | 0.053 |
Among background set 1: | 0.000 | 0.421 | 0.000 | 0.000 | 1.000 | 0.579 | 1.000 | 1.000 |
Among background set 2: | 0.000 | 0.316 | 0.105 | 0.105 | 1.000 | 0.684 | 0.895 | 0.895 |
Among background set 3: | 0.158 | 0.368 | 0.000 | 0.000 | 0.842 | 0.632 | 1.000 | 1.000 |
a Background sets 1, 2 and 3 are composed by type 1 HCV strains isolated in South America, Europe and North America, respectively.
b Numbers refer to nucleotide sequence position relative to strain HCV1b sequence [14].