Table 5.
Suggested conversion of letter nomenclature to allele size for the cat parentage and identification panel.
Letter nomenclature for alleles | |||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Marker | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | 377 |
FCA069 | 93+4 | 95 | 97 | 99 | 101 | 103 | 105 (21) | 107+4 | 109 | 111 | 113 | 115 | 117 | +5 | |||||||||
FCA075 | 104 | 106 | 108 | 110 | 112 | 114 | 116 | 118 | 120 | 122 | 124 (23) | 126 | 128 | 130 | 132+7 | 134 | 136 | 138 | 140 | 142 | 144 | 146 | +4 |
FCA105 | 173 | 175 | 177 | 179 | 181 | 183 | 185 (16) | 187 | 189 | 191 | 193 | 195 | 197−5 | 199 | 201 | 203 | 205 | 207 | −2 | ||||
FCA149 | 122+1 | 124 | 126 | 128+1 | 130 | 132 | 134 (20) | 136 | 138 | 140 | 142 | +2 | |||||||||||
FCA229 | 150 | 152 | 154 | 156 | 158 | 160 | 162 (21) | 164 | 166 | 168−2 | 170 | 172 | 174 | 176 | 0 | ||||||||
FCA310 | 112 | 114 | 116 | 118 | 120 | 122 | 124 (15) | 126 | 128 | 130 | 132 | 134 | 136 | 138−2 | 140 | −2 | |||||||
FCA441 | 145 | 147 | 149 | 151 | 153 | 155+0 | 157 | 159 (12)+0 | 161 | 163 | 165 | 167 | 169 | 171 | 173 | +2 | |||||||
FCA678 | 186 | 188 | 190 | 192 | 194−2 | 196 (17) | 198 | 200 | 202 | 204 | 206 | 0 | |||||||||||
FCA220 | 208 | 210 | 2121 | 2141 | 216 (18) | 218 | 220 | 222 | 224 | 226 | 228 | +2 |
A 1-bp insertion has been noted in marker FCA220, producing additional alleles L1 (215 bp) and K1 (213 bp).
All allele sizes were determined on an ABI 3730 DNA Analyzer (Applied Biosystems). Primers for marker FCA678 have been redesigned from the original publication (Menotti-Raymond et al. 1999), producing a shorter product. Alleles that are underlined have been sequenced for homozygous individuals from different breeds or populations. The actual nucleotide length can be determined by the addition or subtraction of the noted number of base pairs that is presented alongside the allele. The numbers of repeats in the core unit of the microsatellite are presented in parentheses for the middle (M) allele. The number of repeats was directly determined for the alleles that were sequenced and interpolated for the M allele. The anticipated conversion required for the ABI 377 is presented in the last column as the number of base pairs that need to be added or subtracted when compared with the ABI 3730.