Table 2. Primers for RT-PCR amplification of CTV genome and genomic regions.

Set	Primers		Sequences
1	CTV5endFT36	Forward	5′ AATTTCACAAATTCAWCCT 3′
	CTV5endFVT	Forward	5′ AATTTCTCAAATTCACCCGTA 3′
	CTV5endFT30	Forward	5′ AWTTTCGATTCAAATTCACC 3′
	CTV5427R	Reverse	5′ AGTTYGATCCYACTTCCATAG 3′
	CTVR6912	RT	5′ TMGSGCACTRTCRGARGAA 3′
2	CTV5403F	Forward	5′ CTCSCTATGGAAGTRGGATC 3′
	CTV09997R	Reverse	5′ GCRAARCCAGCGTTCGTCAT 3′
	CTV10170RVT	RT	5′ GGTACTCGCCTTCCATCC 3′
	CTV10170RT36	RT	5′ GATACTCACCTTCCATCC 3′
3	CTV09262F	Forward	5′ CCTACYGAATATAAGGGTAG 3′
	CTV14630R	Reverse	5′ TTAACACCACAGGCAACACT 3′
	CTV14887R	RT	5′ ACAAACATMCCTGCCCAAC 3′
4	CTV14469F	Forward	5′ TRGCGTCRCT TGGTTTGTTT 3′
	CTV19395R	Reverse	5′ CTACGAAGCTTGGACCTATGT 3′
	CTV3endR	RT	5′ TGGACCTATGTTGGCCCCCC 3′
5′ end1kb	CTV942R	RT/Reverse	5′ AACCGTCCYCGTACGGTTTC 3′
p33	CTV10834F	Forward	5′ GATGTTTGCYTTCGCGAGCG 3′
	CTV11815R	Reverse	5′ AMCCCGTTTAAACAGAGTC 3′
	CTV12124R	RT	5′ AACCCARAAGYACCATACCG 3′