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. Author manuscript; available in PMC: 2007 Sep 12.
Published in final edited form as: Alcohol. 2007 Mar;41(2):95–132. doi: 10.1016/j.alcohol.2007.03.003

Table 3.

Detailed expression levels and S.D.s for all regionally significant probe sets

Probe set Unigene Entrez gene Symbol Gene description Fold difference FDR Mean iP S.D. iP Mean iNP S.D. iNP
Accumbens
 rc_AI639111_at Rn.93081 308923 Ahi1 Abelson helper integration site 1 -1.54 0.00 810 107 527 60
 X62660mRNA_g_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.52 0.00 1092 184 719 125
 AF090136_at Rn.44269 60442 Lin7c lin-7 homolog C (C. elegans) -1.51 0.00 160 14 106 11
 L81138exon_i_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.48 0.00 438 30 299 53
 M10094_g_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.36 0.00 392 19 288 25
 M11071_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.37 0.00 2623 290 1915 148
 Y00766_at Rn.87394 25657 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.38 0.00 643 82 464 50
 rc_AA799700_at Rn.100471 308993 Sephs2 selenophosphate synthetase 2 -1.61 0.00 354 62 221 43
 AJ001290cds_at Rn.79242 114507 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.40 0.00 784 43 566 85
 rc_AA800712_g_at Rn.13142 361813 Stk38 serine/threonine kinase 38 -1.37 0.00 855 44 632 105
 U48288_at Rn.10557 25228 Akap11 A kinase (PRKA) anchor protein 11 1.50 0.00 312 54 464 46
 U90888_at Rn.11106 25095 Ampd3 adenosine monophosphate deaminase 3 1.37 0.00 102 12 139 19
 rc_AA926149_g_at Rn.3001 24248 Cat catalase 1.42 0.00 197 33 278 34
 rc_AA892775_at Rn.2283 25211 Lyz lysozyme 2.11 0.00 1185 159 2524 501
 rc_AA892797_at Rn.108127 24644 Pgk1 phosphoglycerate kinase 1 2.05 0.00 2189 729 4392 1061
 rc_AA891383_i_at Rn.1276 29672 Psma5 proteasome (prosome, macropain) subunit, alpha type 5 1.44 0.00 123 17 176 16
 U65217_i_at Rn.33311 309622 RT1-Bb RT1 class II, locus Bb 1.46 0.00 48 5 69 7
Amygdala
 rc_AI639111_at Rn.93081 308923 Ahi1 Abelson helper integration site 1 -1.35 0.00 818 118 602 60
 U84410_s_at Rn.10562 25402 Casp3 caspase 3, apoptosis related cysteine protease -1.21 0.00 200 12 166 15
 rc_AI013513_at Rn.8046 64462 Csnk1d casein kinase 1, delta -1.18 0.00 730 23 621 24
 AF016247_at Rn.92730 83573 Ddr2 discoidin domain receptor family, member 2 -1.18 0.00 142 7 120 5
 D12498_s_at Rn.9797 79114 Fgfr1 Fibroblast growth factor receptor 1 -1.21 0.00 671 45 556 27
 U82612cds_g_at Rn.1604 25661 Fn1 fibronectin 1 -1.25 0.00 445 57 354 22
 X05834_at Rn.1604 25661 Fn1 fibronectin 1 -1.32 0.00 1070 95 812 109
 X62660mRNA_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.32 0.00 714 35 545 72
 X62660mRNA_g_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.78 0.00 1182 55 679 163
 X55286_g_at Rn.9437 25675 Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase -1.28 0.00 363 32 283 16
 U93306_at Rn.88869 25589 Kdr kinase insert domain protein receptor -1.50 0.00 121 18 82 15
 AF090136_at Rn.44269 60442 Lin7c lin-7 homolog C (C. elegans) -1.27 0.00 139 11 109 6
 S66184_s_at Rn.11372 24914 Lox lysyl oxidase -1.22 0.00 204 16 167 9
 rc_AI176253_at Rn.133954 59319 Nyw1 ischemia related factor NYW-1 -1.38 0.00 122 15 89 13
 U35345_s_at Rn.3840 29432 Pak2 p21 (CDKN1A)-activated kinase 2 -1.20 0.00 145 9 121 7
 X97772_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.36 0.00 1710 150 1261 142
 X97772_g_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.28 0.00 1466 111 1150 119
 L81136cds_f_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.20 0.00 1150 36 959 44
 L81138exon_i_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.63 0.00 484 36 298 29
 M11071_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.41 0.00 2488 163 1767 141
 M31018_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.23 0.00 1191 70 971 86
 Y00766_at Rn.87394 25657 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.44 0.00 527 99 363 33
 Y00766_g_at Rn.87394 25657 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.41 0.00 1620 407 1130 112
 rc_AA799700_at Rn.100471 308993 Sephs2 selenophosphate synthetase 2 -1.39 0.00 332 31 239 23
 AB001453_at Rn.59227 114858 Shc3 src homology 2 domain-containing transforming protein C3 -1.29 0.00 1166 154 903 87
 U66723_s_at Rn.10140 60423 Slc28a2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 -1.25 0.00 350 35 280 19
 AJ001290cds_at Rn.79242 114507 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.77 0.00 839 48 479 85
 M83107_at Rn.34397 25123 Tagln transgelin -1.22 0.00 507 42 416 27
 D90109_at Rn.6215 25288 Acsl1 acyl-CoA synthetase long-chain family member 1 1.27 0.00 444 30 563 49
 rc_AA891631_at Rn.116338 295365 Amigo amphoretin-induced gene and ORF 1.22 0.00 559 47 680 50
 AF026505_at Rn.24612 114901 Argbp2 Arg/Abl-interacting protein ArgBP2 1.21 0.00 441 16 535 53
 rc_AA891194_s_at Rn.24612 114901 Argbp2 Arg/Abl-interacting protein ArgBP2 1.22 0.00 637 19 779 83
 U07201_at Rn.11172 25612 Asns asparagine synthetase 1.25 0.00 348 27 435 39
 D89514_at Rn.15114 81643 Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 1.32 0.00 318 27 419 34
 rc_AA859645_at Rn.53846 83526 Atrn attractin 1.33 0.00 477 44 635 59
 M60921_g_at Rn.27923 29619 Btg2 B-cell translocation gene 2, antiproliferative 1.19 0.00 254 12 302 20
 U49062_at Rn.6007 25145 Cd24 CD24 antigen 1.32 0.00 895 99 1185 122
 U49062_g_at Rn.6007 25145 Cd24 CD24 antigen 1.24 0.00 476 43 589 53
 rc_AA875414_at Rn.2912 83465 Celsr2 cadherin EGF LAG seven-pass G-type receptor 2 1.25 0.00 957 103 1199 104
 AF019974_at Rn.11090 24259 Chgb chromogranin B 1.25 0.00 3207 381 4004 293
 rc_AI031019_at Rn.9181 64514 Eif2b1 eukaryotic translation initiation factor 2B, subunit 1 alpha 1.17 0.00 346 21 406 12
 rc_AI031019_g_at Rn.9181 64514 Eif2b1 eukaryotic translation initiation factor 2B, subunit 1 alpha 1.29 0.00 254 13 328 26
 rc_AI169802_at Rn.54447 25319 Fth1 ferritin, heavy polypeptide 1 1.29 0.00 4188 348 5445 782
 L14684_at Rn.10913 114017 Gfm G elongation factor 1.30 0.00 212 21 275 24
 rc_AA799581_at Rn.17123 362418 Irak2 interleukin-1 receptor-associated kinase 2 1.22 0.00 583 58 710 37
 rc_AA892316_at Rn.1057 155918 Lcp2 lymphocyte cytosolic protein 2 1.18 0.00 131 7 154 9
 U07181_g_at Rn.1785 24534 Ldhb lactate dehydrogenase B 1.23 0.00 4975 374 6116 291
 rc_AA892775_at Rn.2283 25211 Lyz lysozyme 1.81 0.00 1393 121 2562 518
 rc_AI072943_at Rn.54707 266777 Nptx1 neuronal pentraxin 1 1.32 0.00 429 40 566 66
 U88958_at Rn.3546 83834 Nrn1 neuritin 1.19 0.00 4572 160 5426 249
 rc_AA891220_at Rn.7264 297508 Pbef1 pre-B-cell colony enhancing factor 1 1.25 0.00 301 22 377 36
 U95920_at Rn.98622 81740 Pcm1 pericentriolar material 1 1.52 0.00 488 47 737 49
 AF002281_at Rn.13361 114108 Pdlim3 PDZ and LIM domain 3 1.28 0.00 125 10 160 16
 rc_AA892797_at Rn.108127 24644 Pgk1 phosphoglycerate kinase 1 2.08 0.00 2158 476 4493 1110
 D13907_g_at Rn.841 64198 Pmpcb peptidase (mitochondrial processing) beta 1.26 0.00 321 36 405 36
 X16554_at Rn.9761 29562 Prps1 phosphoribosyl pyrophosphate synthetase 1 1.19 0.00 535 25 639 49
 rc_AA891383_i_at Rn.1276 29672 Psma5 proteasome (prosome, macropain) subunit, alpha type 5 1.57 0.00 123 14 196 38
 U65217_i_at Rn.33311 309622 RT1-Bb RT1 class II, locus Bb 1.39 0.00 51 4 72 8
 L23128_g_at Rn.107070 24750 RT1-N3 RT1 class Ib gene, H2-TL-like, grc region (N3) 1.26 0.00 583 40 732 22
 M62763complete_seq_at Rn.31887 25541 Scp2 sterol carrier protein 2 1.25 0.00 352 32 442 46
 AF009604_at Rn.5909 81921 Sh3gl3 SH3 domain protein 2 C1 1.18 0.00 1346 80 1590 66
 Rc_AI639256_at Rn.40672 301255 Spats1 spermatogenesis associated, serine-rich 1 1.29 0.00 159 12 205 16
 K01934mRNA#2_at Rn.81140 25357 Thrsp thyroid hormone responsive protein 1.30 0.00 384 33 499 53
Frontal cortex
 X62660mRNA_g_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.75 0.00 1075 121 622 151
 X97772_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.42 0.00 1485 105 1052 130
 L81138exon_i_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.76 0.00 475 31 269 11
 Y00766_at Rn.87394 25657 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.39 0.00 493 22 355 26
 AJ001290cds_at Rn.79242 114507 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.44 0.00 779 67 542 71
 AF028784mRNA#1_s_at Rn.91512 24387 Gfap glial fibrillary acidic protein 1.44 0.00 6593 636 9536 1118
 rc_AA892797_at Rn.108127 24644 Pgk1 phosphoglycerate kinase 1 2.08 0.00 2464 483 5107 862
 rc_AA891383_i_at Rn.1276 29672 Psma5 proteasome (prosome, macropain) subunit, alpha type 5 1.78 0.00 119 19 215 56
Hippocampus
 rc_AI639111_at Rn.93081 308923 Ahi1 Abelson helper integration site 1 -1.48 0.00 705 89 476 45
 rc_AA893602_at Rn.14812 316051 Azi2 5-azacytidine induced gene 2 -1.28 0.00 642 51 501 21
 rc_AI170268_at Rn.1868 24223 B2m beta-2 microglobulin -1.31 0.00 2242 272 1704 162
 X05834_at Rn.1604 25661 Fn1 fibronectin 1 -1.55 0.00 694 62 448 31
 X62660mRNA_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.36 0.00 718 76 526 38
 X62660mRNA_g_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -2.07 0.00 1099 219 526 49
 X76985_at Rn.11404 59073 Lxn latexin -1.34 0.00 904 89 672 45
 X97772_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.33 0.00 1704 167 1279 133
 X97772_g_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.39 0.00 1522 166 1094 39
 rc_AA800305_at Rn.44477 64633 Rab5a RAB5A, member RAS oncogene family -1.29 0.00 463 31 362 42
 L81138exon_i_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.53 0.00 469 27 307 16
 M11071_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.41 0.00 2351 271 1660 100
 rc_AA799700_at Rn.100471 308993 Sephs2 selenophosphate synthetase 2 -1.47 0.00 382 33 260 17
 AJ001290cds_at Rn.79242 114507 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.47 0.00 846 81 583 117
 rc_AA800712_g_at Rn.13142 361813 Stk38 serine/threonine kinase 38 -1.21 0.00 836 43 691 36
 M83107_at Rn.34397 25123 Tagln transgelin -1.23 0.00 435 34 353 17
 U48288_at Rn.10557 25228 Akap11 A kinase (PRKA) anchor protein 11 1.32 0.00 309 30 408 29
 Z12298cds_s_at Rn.106103 29139 Dcn decorin 1.29 0.00 477 49 614 48
 AF076619_at Rn.30028 58844 Grb14 growth factor receptor bound protein 14 1.32 0.00 342 30 451 35
 AF008554_at Rn.43578 116967 Iag2 implantation-associated protein 1.31 0.00 173 17 228 27
 rc_AA892797_at Rn.108127 24644 Pgk1 phosphoglycerate kinase 1 2.28 0.00 2064 556 4664 923
 L23128_g_at Rn.107070 24750 RT1-N3 RT1 class Ib gene, H2-TL-like, grc region (N3) 1.35 0.00 581 46 781 34
 AB011530_at Rn.30002 65047 Slit1 slit homolog 1 (Drosophila) 1.32 0.00 640 42 846 42
Striatum
 rc_AI639111_at Rn.93081 308923 Ahi1 Abelson helper integration site 1 -1.46 0.00 745 75 511 76
 L07114_at Rn.10002 25383 Apobec1 apolipoprotein B editing complex 1 -1.23 0.00 146 5 118 4
 X05834_at Rn.1604 25661 Fn1 fibronectin 1 -1.35 0.00 810 42 605 99
 X62660mRNA_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -1.35 0.00 651 18 482 34
 X62660mRNA_g_at Rn.57528 300850 Gsta4 glutathione S-transferase, alpha 4 -2.00 0.00 1047 109 523 34
 AF090136_at Rn.44269 60442 Lin7c lin-7 homolog C (C. elegans) -1.31 0.00 148 11 113 7
 rc_AI008677_s_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.33 0.00 741 45 562 66
 X97772_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.28 0.00 1600 95 1250 73
 X97772_g_at Rn.6872 58835 Phgdh 3-phosphoglycerate dehydrogenase -1.29 0.00 1369 90 1062 73
 U42413_at Rn.11089 25520 Prkag1 protein kinase, AMP-activated, gamma 1 noncatalytic subunit -1.19 0.00 1211 33 1020 52
 S71021_s_at Rn.2660 117042 Rpl6 ribosomal protein L6 -1.21 0.00 5829 167 4808 255
 L81138exon_i_at Rn.2115 83789 Rps2 ribosomal protein S2 -1.64 0.00 427 35 260 16
 M11071_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.39 0.00 2183 79 1574 93
 M31018_f_at Rn.40130 24737 RT1-Aw2 RT1 class Ib, locus Aw2 -1.26 0.00 1039 38 825 91
 Y00766_at Rn.87394 25657 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.46 0.00 632 56 439 84
 rc_AA799700_at Rn.100471 308993 Sephs2 selenophosphate synthetase 2 -1.45 0.00 328 44 225 23
 AB001453_at Rn.59227 114858 Shc3 src homology 2 domain-containing transforming protein C3 -1.39 0.00 1361 103 985 125
 AJ001290cds_at Rn.79242 114507 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.41 0.00 791 61 566 89
 M12112mRNA#3_s_at Rn.6319 24179 Agt angiotensinogen 1.30 0.00 477 42 621 44
 U67136_at Rn.122003 171026 Akap5 A kinase (PRKA) anchor protein 5 1.39 0.00 163 12 229 35
 M60322_g_at Rn.107801 24192 Akr1b4 aldo-keto reductase family 1, member B4 (aldose reductase) 1.21 0.00 537 35 650 37
 U07201_at Rn.11172 25612 Asns asparagine synthetase 1.20 0.00 334 15 402 22
 M55534mRNA_s_at Rn.98208 25420 Cryab crystallin, alpha B 1.35 0.00 869 155 1161 83
 X15705cds_at Rn.112579 60460 Hspa2 heat shock protein 2 1.24 0.00 130 6 161 11
 rc_AA818677_at Rn.108194 24587 Nefh neurofilament, heavy polypeptide 1.44 0.00 586 68 841 62
 rc_AA892797_at Rn.108127 24644 Pgk1 phosphoglycerate kinase 1 2.24 0.00 2151 294 4847 896
 rc_AA891383_i_at Rn.1276 29672 Psma5 proteasome (prosome, macropain) subunit, alpha type 5 1.63 0.00 122 24 197 26
 U67082_at Rn.10663 25165 Znf386 zinc finger protein 386 (Kruppel-like) 1.22 0.00 194 11 236 13

S.D. = standard deviation; FDR = false discovery rate; iP = inbred alcohol-preferring rat; iNP = inbred alcohole—non-preferring rat; RMA = Robust Multi-Chip Average.

Positive fold difference is iP/iNP; negative is iNP/iP.

Expression levels are those obtained after RMA background correction and scaling as indicated in Methods.