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. Author manuscript; available in PMC: 2007 Sep 12.
Published in final edited form as: Alcohol. 2007 Mar;41(2):95–132. doi: 10.1016/j.alcohol.2007.03.003

Table 5.

Significant fold differences in combined region analysis and in individual region analyses

Probe set Unigene Entrez
gene		 Chr. Base pair
location		 QTL Gene symbol Gene name Comb.
regions		 ACB AMYG FC HIPP
D00512_at Rn.4054 25014 8 -57,063,521 Acat1 acetyl-coenzyme A acetyltransferase 1 -1.11
D90109_at Rn.6215 25288 16 -49,036,966 Alc7 & 11 Acsl1 acyl-CoA synthetase long-chain family member 1 1.27
S56508_s_at Rn.33697 117243 10 39,743,427 Acsl6 acyl-CoA synthetase long-chain family member 6 1.15
J00692_at Rn.82732 29437 19 -54,086,370 Acta1 actin, alpha 1, skeletal muscle 1.10
Rc_AA891812_at Rn.5788 24170 14 -81,752,822 Add1 adducin 1 (alpha) -1.09
X83715_at Rn.5788 24170 14 -81,752,822 Add1 adducin 1 (alpha) -1.14
S47609_s_at Rn.11180 25369 20 -13,815,945 Adora2a adenosine A2a receptor -1.08
M12112mRNA#3_s_at Rn.6319 24179 19 -54,743,436 Agt angiotensinogen 1.20
Rc_AA943892_at Rn.6319 24179 19 -54,743,436 Agt angiotensinogen 1.16
Rc_AI639111_at Rn.93081 308923 1 16,332,862 Ahi1 Abelson helper integration site 1 -1.46 -1.54 -1.35 -1.48
U48288_at Rn.10557 25228 2 0 Akap11 A kinase (PRKA) anchor protein 11 1.24 1.50 1.32
U67136_at Rn.122003 171026 6 98,926,570 Alc17 Akap5 A kinase (PRKA) anchor protein 5 1.23
M60322_g_at Rn.107801 24192 4 -61,921,567 Alc14 & 16 Akr1b4 aldo-keto reductase family 1, member B4 (aldose reductase) 1.19
D17309_at Rn.25716 192242 4 65,249,037 Alc14 & 16 Akr1d1 aldo-keto reductase family 1, member D1 -1.09
D30041_at Rn.87066 25233 1 82,764,343 Akt2 thymoma viral proto-oncogene 2 -1.11
D86297_at Rn.32517 25748 X 39,853,992 Alas2 aminolevulinic acid synthase 2 -1.14
Rc_AA945321_at Rn.34353 24186 14 -19,126,964 Alb albumin 1.06
AF001898_at Rn.6132 24188 1 223,895,697 Aldh1a1 aldehyde dehydrogenase family 1, member A1 1.20
Rc_AA891631_at Rn.116338 295365 2 203,715,385 Alc15 Amigo amphoretin-induced gene and ORF 1.11 1.22
U90888_at Rn.11106 25095 1 168,644,154 Ampd3 adenosine monophosphate deaminase 3 1.27 1.37
D42137exon_s_at Rn.3318 25673 2 -122,894,171 Anxa5 annexin A5 1.10
Rc_AI170212_s_at Rn.11007 140667 16 73,688,647 Ap3m2 adaptor-related protein complex 3, mu 2 subunit -1.12
AF029107_at Rn.62687 83610 1 119,049,224 Apba2 amyloid beta (A4) precursor protein-binding, family A, member 2 -1.13
L07114_at Rn.10002 25383 4 -159,278,107 Alc18 Apobec1 apolipoprotein B editing complex 1 -1.15
X55572_at Rn.11339 25239 11 882,464 Apod apolipoprotein D 1.25
AF026505_at Rn.24612 114901 16 -49,722,613 Alc7 & 11 Argbp2 Arg/Abl-interacting protein ArgBP2 1.21
Rc_AA891194_s_at Rn.24612 114901 16 -49,722,613 Alc7 & 11 Argbp2 Arg/Abl-interacting protein ArgBP2 1.22
Rc_AI639196_at Rn.33757 66013 X -82,667,647 Arhgef9 Cdc42 guanine nucleotide exchange factor (GEF) 9 -1.22
U07201_at Rn.11172 25612 4 -32,877,146 Asns asparagine synthetase 1.19 1.25
D89514_at Rn.15114 81643 9 70,823,725 Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase 1.25 1.32
J04024_at Rn.2305 29693 12 35,129,987 Alc6 & 10 Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -1.13
Rc_AA859645_at Rn.53846 83526 3 118,444,840 Atrn attractin 1.26 1.33
Rc_AA893602_at Rn.14812 316051 8 122,981,038 Azi2 5-azacytidine induced gene 2 -1.23 -1.28
Rc_AI170268_at Rn.1868 24223 3 108,833,491 B2m beta-2 microglobulin -1.18 -1.31
Rc_AA892014_r_at Rn.3516 114612 20 -3,611,355 Bat1a HLA-B-associated transcript 1A 1.06
U72350_at Rn.10323 24888 3 -143,034,710 Bcl2l1 Bcl2-like 1 -1.07
U34963_s_at Rn.10323 24888 3 -143,034,710 Bcl2l1 Bcl2-like 1 -1.11
AF065431_s_at Rn.82709 64547 3 115,597,895 Bcl2l11 BCL2-like 11 (apoptosis facilitator) -1.08
Rc_AA925846_s_at Rn.89639 117271 12 -39,383,652 Alc10 Bid3 BH3 interacting (with BCL2 family) domain, apoptosis agonist 1.09
U30831_at Rn.31973 192189 1 -176,738,853 Bk brain and kidney protein 1.10
D63860_s_at Rn.53974 25667 14 -12,065,634 Bmp3 bone morphogenetic protein 3 1.06
AJ000347_g_at Rn.8453 64473 13 101,540,167 Bpnt1 bisphosphate 3 -nucleotidase 1 1.13
M60921_g_at Rn.27923 29619 13 -47,041,028 Btg2 B-cell translocation gene 2, antiproliferative 1.13 1.19
X71127_at Rn.6702 29687 5 -155,657,561 Alc4 C1qb complement component 1, q subcomponent, beta polypeptide 1.08
Rc_AI178135_at Rn.2765 29681 10 -57,895,408 C1qbp complement component 1, q subcomponent binding protein 1.09
D88250_at Rn.4037 192262 4 -160,981,068 Alc18 C1s complement component 1, s subcomponent 1.07
M29866_s_at Rn.11378 24232 9 -64,513,131 C3 complement component 3 1.19
X52477_at Rn.11378 24232 9 -64,513,131 C3 complement component 3 1.12
U16802_at Rn.88197 26989 15 13,859,285 Cadps Ca2+-dependent secretion activator 1.08
M31178_g_at Rn.3908 83839 5 -198,836,347 Alc4 Calb1 calbindin 1 1.16
X13933_s_at Rn.4166 24242 6 124,481,414 Alc17 Calm1 calmodulin 1 1.07
S83194_s_at Rn.4851 60341 10 59,922,371 Camkk1 calcium/calmodulin-dependent protein kinase kinase 1, alpha 1.12
rc_AI638943_at Rn.43383 298657 5 0 Alc4 Car6 carbonic anhydrase 6 1.09
U84410_s_at Rn.10562 25402 16 -48,944,301 Alc7 & 11 Casp3 caspase 3, apoptosis related cysteine protease 1.21
rc_AA926149_g_at Rn.3001 24248 3 88,550,504 Cat catalase 1.32 1.42
M11670_at Rn.3001 24248 3 88,550,504 Cat catalase 1.18
rc_AA893699_s_at Rn.4157 362201 3 107,683,801 Ccndbp1 cyclin D-type binding-protein 1 1.11
U49062_at Rn.6007 25145 20 47,531,055 Cd24 CD24 antigen 1.18 1.32
U49062_g_at Rn.6007 25145 20 47,531,055 Cd24 CD24 antigen 1.09 1.24
X53517_at Rn.2357 29185 1 -95,788,071 Cd37 CD37 antigen 1.08
D29646_at Rn.11414 25668 14 -72,322,869 Cd38 CD38 antigen 1.13
X13016_at Rn.3705 245962 13 87,873,428 Cd48 CD48 antigen 1.18
rc_AA818025_g_at Rn.1231 25407 3 89,140,026 Cd59 CD59 antigen 1.10
X13044_at Rn.33804 25599 18 56,828,742 Cd74 CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) 1.21
X13044_g_at Rn.33804 25599 18 56,828,742 Cd74 CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) 1.18
X14254cds_g_at Rn.33804 25599 18 56,828,742 Cd74 CD74 antigen (invariant polpypeptide of major histocompatibility class II antigen-associated) 1.12
rc_AI176308_at Rn.60067 64465 5 156,116,164 Alc4 Cdc42 cell division cycle 42 homolog (S. cerevisiae) 1.12
AF000578_at Rn.54977 85434 9 11,162,952 Cdc5l cell division cycle 5-like (S. pombe) 1.10
D83349_at Rn.108785 29182 6 -156,062,114 Alc17 Cdh22 cadherin 22 1.43
L41275cds_s_at Rn.10089 114851 20 7,376,551 Cdkn1a cyclin-dependent kinase inhibitor 1A -1.11
AB009999_g_at Rn.18983 81925 14 -9,072,988 Cds1 CDP-diacylglycerol synthase 1 1.09
rc_AA875414_at Rn.2912 83465 2 0 Celsr2 cadherin EGF LAG seven-pass G-type receptor 2 1.14 1.25
AF019974_at Rn.11090 24259 3 120,477,308 Chgb chromogranin B 1.25
X59737mRNA_g_at Rn.155589 29593 3 108,058,997 Ckmt1 creatine kinase, mitochondrial 1, ubiquitous 1.10
rc_AI169005_at Rn.4089 65160 1 155,025,118 Clns1a chloride channel, nucleotide-sensitive, 1A 1.14
AF102854_at Rn.42893 59322 X 58,251,535 Cnksr2 membrane-associated guanylate kinase-interacting protein 1.08
rc_AA944422_at Rn.57635 54321 2 218,007,864 Alc15 Cnn3 calponin 3, acidic 1.16
rc_AA892559_at Rn.6067 25707 1 -216,001,097 Cntf ciliary neurotrophic factor 1.11
D87248_at Rn.10644 27256 4 140,322,847 Alc14 & 16 Cntn6 contactin 6 1.09
L20427_at Rn.3824 29309 5 36,640,896 Alc4 Coq3 coenzyme Q3 homolog, methyltransferase (yeast) 1.07
rc_AA866477_at Rn.2026 303393 X 94,211,488 Cox7b cytochrome c oxidase subunit VIIb 1.09
S66024_at Rn.10251 25620 17 62,793,252 Crem cAMP responsive element modulator 1.07
J02844_s_at Rn.4896 83842 4 -22,023,912 Crot carnitine O-octanoyltransferase -1.12
U26033_at Rn.4896 83842 4 -22,023,912 Crot carnitine O-octanoyltransferase -1.15
M55534mRNA_s_at Rn.98208 25420 8 54,126,302 Cryab crystallin, alpha B 1.32
X60351cds_s_at Rn.98208 25420 8 54,126,302 Cryab crystallin, alpha B 1.29
rc_AI013513_at Rn.8046 64462 10 -110,177,115 Csnk1d casein kinase 1, delta -1.10 -1.18
M95768_at Rn.11199 81652 2 244,635,104 Ctbs chitobiase, di-N-acetyl- 1.08
U40004_s_at Rn.91314 313375 5 -116,749,562 Alc4 Cyp2j9 cytochrome P450, family 2, subfamily j, polypeptide 9 1.08
U36992_at Rn.53969 25429 2 0 Cyp7b1 cytochrome P450, family 7, subfamily b, polypeptide 1 1.12
L33894_at Rn.10058 79127 14 -20,886,695 Dck deoxycytidine kinase -1.12
Z12298cds_s_at Rn.106103 29139 7 35,024,504 Dcn decorin 1.17 1.29
X59859_i_at Rn.106103 29139 7 35,024,504 Dcn decorin 1.12
D86041_at Rn.7398 64157 2 243,918,960 Ddah1 dimethylarginine dimethylaminohydrolase 1 1.21
rc_AI058941_s_at Rn.7398 64157 2 243,918,960 Ddah1 dimethylarginine dimethylaminohydrolase 1 1.10
rc_AA894273_at Rn.7398 64157 2 243,918,960 Ddah1 dimethylarginine dimethylaminohydrolase 1 -1.19
AF016247_at Rn.92730 83573 13 0 Ddr2 discoidin domain receptor family, member 2 -1.18
rc_AI170685_at Rn.3904 84026 19 22,858,527 Dnaja2 DnaJ (Hsp40) homolog, subfamily A, member 2 1.11
rc_AA799570_at Rn.27927 300721 8 58,269,846 Dnaja4 DnaJ (Hsp40) homolog, subfamily A, member 4 1.10
U15138_at Rn.31981 81655 19 469,162 Dncli2 dynein, cytoplasmic, light intermediate polypeptide 2 1.09
D85035_g_at Rn.133148 81656 2 214,894,962 Alc15 Dpyd dihydropyrimidine dehydrogenase -1.11
Z46882cds_at Rn.2889 25416 15 0 Dpysl2 dihydropyrimidinase-like 2 -1.10
AF013144_at Rn.10877 171109 1 259,965,278 Dusp5 dual specificity phosphatase 5 -1.07
X94185cds_s_at Rn.4313 116663 7 36,913,534 Dusp6 dual specificity phosphatase 6 -1.28
U08976_at Rn.6148 64526 1 84,010,830 Ech1 enoyl coenzyme A hydratase 1, peroxisomal 1.12
D89730_g_at Rn.8037 305604 14 109,759,971 Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 -1.13
D89730_at Rn.8037 305604 14 109,759,971 Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 -1.15
rc_AA893770_g_at Rn.144669 245963 3 4,760,573 Egfl7 EGF-like domain 7 -1.07
rc_AI031019_g_at Rn.9181 64514 12 33,001,710 Alc6 & 10 Eif2b1 eukaryotic translation initiation factor 2B, subunit 1 alpha 1.23 1.29
rc_AI031019_at Rn.9181 64514 12 33,001,710 Alc6 & 10 Eif2b1 eukaryotic translation initiation factor 2B, subunit 1 alpha 1.19 1.17
X02610_g_at Rn.4236 24333 5 167,404,823 Alc4 Eno1 enolase 1, alpha -1.11
X02610_at Rn.4236 24333 5 167,404,823 Alc4 Eno1 enolase 1, alpha -1.15
X78689cds_at Rn.24569 79208 14 0 Epha5 EphA5 -1.11
X59290mRNA_at Rn.62934 60589 5 0 Alc4 Epha8 Eph receptor A8 -1.08
M26125_at Rn.3603 25315 13 -96,911,908 Ephx1 epoxide hydrolase 1, microsomal 1.09
U07619_at Rn.9980 25584 2 218,334,111 Alc15 F3 coagulation factor III -1.19
X73371_at Rn.33323 289211 13 -86,823,198 Fcgr2b Fc receptor, IgG, low affinity IIb 1.11
D12498_s_at Rn.9797 79114 16 -70,870,238 Fgfr1 Fibroblast growth factor receptor 1 -1.11 -1.21
M91599mRNA_at Rn.24104 25114 17 0 Fgfr4 fibroblast growth factor receptor 4 -1.09
M84719_at Rn.867 25256 13 -78,517,957 Fmo1 flavin containing monooxygenase 1 1.13
X05834_at Rn.1604 25661 9 -70,849,162 Fn1 fibronectin 1 -1.34 -1.32 -1.55
U82612cds_g_at Rn.1604 25661 9 -70,849,162 Fn1 fibronectin 1 1.15 1.25
rc_AA955600_at Rn.1604 25661 9 -70,849,162 Fn1 fibronectin 1 -1.07
M28259cds_at Rn.1604 25661 9 -70,849,162 Fn1 fibronectin 1 1.13
L00191cds#1_s_at Rn.1604 25661 9 -70,849,162 Fn1 fibronectin 1 -1.27
rc_AI230914_at Rn.8873 64511 6 99,431,422 Alc17 Fntb farnesyltransferase, CAAX box, beta 1.17
L27421_at Rn.62653 65153 3 10,200,569 Freq frequenin homolog (Drosophila) -1.22
rc_AI169802_at Rn.54447 25319 1 212,588,882 Fth1 ferritin, heavy polypeptide 1 1.26 1.29
M59861_at Rn.2328 64392 0 0 Fthfd formyltetrahydrofolate dehydrogenase 1.07
X15466cds_at Rn.114781 25450 14 -38,532,649 Gabrb1 gamma-aminobutyric acid receptor, subunit beta 1 1.21
rc_AI639378_at Rn.40168 362760 6 0 Alc17 Galntl1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 -1.11
rc_AA859837_g_at Rn.24783 83585 1 -224,743,773 Gda guanine deaminase -1.21
rc_AA859837_at Rn.24783 83585 1 -224,743,773 Gda guanine deaminase -1.28
AF028784mRNA#1_s_at Rn.91512 24387 10 -92,074,249 Gfap glial fibrillary acidic protein 1.23 1.44
L06986_at Rn.10935 24388 14 2,597,302 Gfi1 growth factor independent 1 -1.09
L14684_at Rn.10913 114017 2 157,233,008 Gfm G elongation factor 1.18 1.30
X55246_at Rn.10109 25674 10 -40,936,489 Glra1 glycine receptor, alpha 1 subunit -1.11
M17526_g_at Rn.90161 50664 19 -11,476,908 Gnao guanine nucleotide binding protein, alpha o -1.26
L10326_at Rn.31 24896 3 0 Gnas GNAS complex locus 1.10
L02896_at Rn.7044 58920 0 0 Gpc1 glypican 1 -1.12
AF058795_at Rn.118960 83633 5 -63,241,575 Alc4 Gpr51 G protein-coupled receptor 51 1.12
AF076619_at Rn.30028 58844 3 -46,728,757 Grb14 growth factor receptor bound protein 14 1.21 1.32
M92076_at Rn.41715 24416 4 0 Grm3 glutamate receptor, metabotropic 3 -1.31
X96790_at Rn.10409 81672 4 146,577,418 Alc14 & 16 Grm7 glutamate receptor, metabotropic 7 -1.08
X62660mRNA_g_at Rn.57528 300850 8 0 Gsta4 glutathione S-transferase, alpha 4 -1.81 -1.52 -1.78 -1.75 -2.07
X62660mRNA_at Rn.57528 300850 8 0 Gsta4 glutathione S-transferase, alpha 4 -1.29 -1.32 -1.36
X04229cds_s_at Rn.93760 24423 2 -203,538,197 Alc15 Gstm1 glutathione S-transferase, mu 1 1.11
E01415cds_s_at Rn.6036 81869 2 -203,454,119 Alc15 Gstm3 glutathione S-transferase, mu type 3 1.15
AB008807_at Rn.25166 114846 1 253,493,290 Gsto1 glutathione S-transferase omega 1 1.20
X56325mRNA_s_at Rn.107334 25632 10 -15,585,407 Alc5 & 9 Hba-a1 hemoglobin alpha, adult chain 1 -1.19
M94918mRNA_f_at Rn.36966 24440 1 -161,666,147 Hbb hemoglobin beta chain complex -1.21
U09551_at Rn.89226 27080 6 -50,204,414 Alc17 Hbp1 high mobility group box transcription factor 1 1.07
D13417_g_at Rn.19727 29577 11 -72,661,439 Hes1 hairy and enhancer of split 1 (Drosophila) -1.08
Y09507_at Rn.10852 29560 6 96,422,479 Alc17 Hif1a hypoxia inducible factor 1, alpha subunit 1.10
U89695_at Rn.29981 84017 7 -59,659,284 Hmga2 high mobility group AT-hook 2 -1.07
X55286_g_at Rn.9437 25675 2 -27,047,872 Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase -1.28
M33648_at Rn.29594 24450 2 193,091,489 Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 -1.07
M33648_g_at Rn.29594 24450 2 193,091,489 Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 -1.15
D17711cds_s_at Rn.11854 117282 17 12,196,629 Hnrpk heterogenous nuclear ribonucleoprotein K 1.07
U16845_at Rn.10075 50864 8 -28,587,115 Hnt neurotrimin -1.43
AB007689_g_at Rn.30014 29547 1 -137,905,533 Homer2 homer homolog 2 (Drosophila) -1.09
AF009656mRNA_s_at Rn.47 24465 X 140,003,079 Hprt hypoxanthine guanine phosphoribosyl transferase 1.15
X15705cds_at Rn.112579 60460 6 99,003,760 Alc17 Hspa2 heat shock protein 2 1.27
AF008554_at Rn.43578 116967 X -94,168,934 Iag2 implantation-associated protein 1.18 1.31
U77777_s_at Rn.11118 29197 8 53,955,637 Il18 interleukin 18 1.17
AJ222813_s_at Rn.11118 29197 8 53,955,637 Il18 interleukin 18 1.15
M58587_at Rn.1716 24499 2 -182,028,156 Il6r interleukin 6 receptor 1.11
rc_AA799581_at Rn.17123 362418 4 149,787,869 Alc14 & 16 Irak2 interleukin-1 receptor-associated kinase 2 1.08 1.22
U20181_at Rn.10132 64831 8 58,452,371 Ireb2 iron responsive element binding protein 2 1.06
rc_AA893384_g_at Rn.1499 292892 1 95,548,394 Irf3 interferon regulatory factor 3 1.06
X83231_at Rn.89576 50693 16 6,341,044 Alc7, 11, & 13 Itih3 inter-alpha trypsin inhibitor, heavy chain 3 1.16
X56917_at Rn.9877 81677 3 106,153,909 Itpka inositol 1,4,5-trisphosphate 3-kinase A 1.08
rc_AI231213_g_at Rn.3022 83628 3 -77,728,200 Kai1 kangai 1 1.11
rc_AI639313_at Rn.87882 84009 11 68,205,034 Kalrn kalirin, RhoGEF kinase 1.09
X62840mRNA_s_at Rn.33095 25327 1 97,006,385 Kcnc1 potassium voltage-gated channel,Shaw-related subfamily, member 1 1.17
AJ007627_at Rn.144567 27150 7 138,061,054 Kcnh3 potassium voltage-gated channel, subfamily H (eag-related), member 3 -1.09
AF022819_at Rn.15693 59324 19 56,221,480 Kcnk1 potassium channel, subfamily K, member 1 1.08
U93306_at Rn.88869 25589 14 0 Kdr kinase insert domain protein receptor 1.28 1.50
AF071204_at Rn.44216 60427 7 37,734,427 Kitl kit ligand 1.07
AF071204_g_at Rn.44216 60427 7 37,734,427 Kitl kit ligand -1.09
K02814_at Rn.128333 24903 11 80,167,087 Kng1 kininogen 1 1.09
rc_AI639470_g_at Rn.125065 450225 10 -88,302,989 Krt10 keratin 10 1.07
D25224_at Rn.999 29236 8 125,119,975 Lamr1 laminin receptor 1 (ribosomal protein SA) 1.08
rc_AA892316_at Rn.1057 155918 10 19,021,026 Alc9 & 12 Lcp2 lymphocyte cytosolic protein 2 1.18
U07181_g_at Rn.1785 24534 4 180,306,690 Alc18 Ldhb lactate dehydrogenase B 1.23
X96437mRNA_g_at Rn.23638 294235 20 -3,076,800 Ler3 immediate early response 3 1.11
AF090134_at Rn.31766 85327 7 45,990,892 Lin7a lin-7 homolog a (C. elegans) -1.16
AF090136_at Rn.44269 60442 3 95,224,369 Lin7c lin-7 homolog C (C. elegans) -1.35 -1.51 -1.27
S66184_s_at Rn.11372 24914 18 -47,931,499 Lox lysyl oxidase 1.22
rc_AI232268_at Rn.10293 116565 14 0 Lrpap1 low density lipoprotein receptor-related protein associated protein 1 1.15
Z11995cds_g_at Rn.10293 116565 14 0 Lrpap1 low density lipoprotein receptor-related protein associated protein 1 1.13
Z11995cds_at Rn.10293 116565 14 0 Lrpap1 low density lipoprotein receptor-related protein associated protein 1 1.08
X76985_at Rn.11404 59073 2 -157,259,999 Lxn latexin -1.19 1.34
rc_AA946044_s_at Rn.4338 81515 5 16,933,105 Alc4 Lyn Yamaguchi sarcoma viral (v-yes-1) oncogene homolog 1.10
rc_AA892775_at Rn.2283 25211 7 -56,628,438 Lyz lysozyme 1.54 2.11 1.81
U05784_s_at Rn.41412 64862 19 51,852,067 Map1lc3b microtubule-associated proteins 1A/1B light chain 3 1.07
M64301_g_at Rn.88457 58840 8 -80,231,782 Mapk6 mitogen-activated protein kinase 6 1.08
rc_AI227608_s_at Rn.2455 29477 10 93,425,375 Mapt microtubule-associated protein tau -1.29
AF095741_at Rn.11802 171451 13 -100,998,349 Mg87 Mg87 protein -1.11
rc_AA892864_at Rn.40396 29254 4 123,066,973 Alc14 & 16 Mgll monoglyceride lipase -1.11
rc_AI111401_s_at Rn.27882 29688 1 0 Minpp1 multiple inositol polyphosphate histidine phosphatase 1 1.08
M15944_at Rn.33598 24590 2 152,981,686 Mme membrane metallo endopeptidase -1.05
M99485_at Rn.9687 24558 20 1,601,730 Mog myelin oligodendrocyte glycoprotein 1.11
L21995_s_at Rn.9687 24558 20 1,601,730 Mog myelin oligodendrocyte glycoprotein 1.08
rc_AI639359_at Rn.98599 58808 9 -57,843,928 Mpp4 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 1.08
D14688_s_at Rn.103179 50685 9 -110,380,900 Mrlcb myosin light chain, regulatory B 1.10
X06564_at Rn.11283 24586 8 -52,841,403 Ncam1 neural cell adhesion molecule 1 -1.20
Z12152_at Rn.10971 24588 15 -47,714,153 Nef3 neurofilament 3, medium 1.16
rc_AA818677_at Rn.108194 24587 14 -85,614,415 Nefh neurofilament, heavy polypeptide 1.18
X13804cds_at Rn.108194 24587 14 -85,614,415 Nefh neurofilament, heavy polypeptide 1.11
D82074_at Rn.44289 29458 3 -62,121,015 Neurod1 neurogenic differentiation 1 1.14
M82826_i_at Rn.10686 24592 10 65,545,464 Nf1 neurofibromatosis 1 -1.16
AF031880_at Rn.18568 83613 15 47,652,082 Nfl neurofilament, light polypeptide 1.08
U31203_at Rn.10154 25495 10 0 Nog noggin 1.09
rc_AI072943_at Rn.54707 266777 10 -108,933,164 Nptx1 neuronal pentraxin 1 1.14 1.32
M15880_at Rn.9714 24604 4 78,314,142 Alc14 & 16 Npy neuropeptide Y -1.14
Z11504cds_at Rn.11642 29358 16 -24,747,181 Alc7 & 11 Npy1r neuropeptide Y receptor Y1 1.08
U66274_at Rn.10532 25340 16 24,765,172 Alc7 & 11 Npy5r neuropeptide Y receptor Y5 1.11
rc_AA943331_s_at Rn.11271 24605 2 198,255,369 Nras neuroblastoma ras oncogene 1.07
U88958_at Rn.3546 83834 0 0 Nrn1 neuritin 1.10 1.19
L14851_at Rn.10926 116508 6 112,277,485 Alc17 Nrxn3 neurexin 3 -1.11
V01543mRNA_at Rn.2865 25247 14 77,934,337 Nsg1 neuron specific gene family member 1 -1.07
E03082cds_s_at Rn.9715 81737 4 -162,680,717 Alc18 Ntf3 neurotrophin 3 1.07
M86742cds_s_at Rn.44225 25730 1 95,963,687 Ntf5 neurotrophin 5 -1.06
X97121_at Rn.127792 64636 0 0 Ntsr2 neurotensin receptor 2 1.08
rc_AI176253_at Rn.133954 59319 3 0 Nyw1 ischemia related factor NYW-1 -1.38
M93297cds_at Rn.1430 64313 1 -192,176,503 Oat ornithine aminotransferase 1.11
X07944exon#1-12_s_at Rn.874 24609 6 41,312,265 Alc17 Odc1 ornithine decarboxylase 1 1.06
U93197_at Rn.9783 171116 11 -73,063,058 Opa1 optic atrophy 1 homolog (human) 1.12
U47031_at Rn.7176 29659 12 -34,807,290 Alc6 & 10 P2rx4 purinergic receptor P2X, ligand-gated ion channel 4 -1.08
rc_AA899935_at Rn.24751 64189 8 -48,947,322 Pafah1b2 platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit 1.07
U35345_s_at Rn.3840 29432 11 70,587,549 Pak2 p21 (CDKN1A)-activated kinase 2 -1.20
AJ007291_g_at Rn.30105 117287 5 -168,060,336 Alc4 Park7 fertility protein SP22 1.15
rc_AA891220_at Rn.7264 297508 6 51,132,285 Alc17 Pbef1 pre-B-cell colony enhancing factor 1 1.25
U95920_at Rn.98622 81740 16 0 Pcm1 pericentriolar material 1 1.30 1.52
rc_AI232379_at Rn.55127 25267 14 0 Pdgfra platelet derived growth factor receptor, alpha polypeptide 1.13
M86870_at Rn.39305 116598 4 -76,205,527 Alc14 & 16 Pdia4 protein disulfide isomerase associated 4 1.13
AF002281_at Rn.13361 114108 16 -49,637,142 Alc7 & 11 Pdlim3 PDZ and LIM domain 3 1.15 1.28
U77697_at Rn.1878 29583 0 -96,070,590 Pecam platelet/endothelial cell adhesion molecule -1.14
D63673_at Rn.10675 117265 9 10,081,699 Pex6 peroxisomal biogenesis factor 6 -1.08
rc_AA892797_at Rn.108127 24644 X 94,397,574 Pgk1 phosphoglycerate kinase 1 2.14 2.05 2.08 2.08 2.28
X97772_at Rn.6872 58835 2 -193,110,696 Phgdh 3-phosphoglycerate dehydrogenase -1.33 -1.36 -1.42 -1.33
X97772_g_at Rn.6872 58835 2 -193,110,696 Phgdh 3-phosphoglycerate dehydrogenase -1.31 -1.28 -1.39
rc_AI008677_s_at Rn.6872 58835 2 -193,110,696 Phgdh 3-phosphoglycerate dehydrogenase -1.27
M98826mRNA_g_at Rn.10399 29353 12 -27,893,003 Alc10 Phkg1 phosphorylase kinase gamma 1 -1.08
L14003UTR#1_f_at Rn.54456 25046 13 43,799,887 Pigr polymeric immunoglobulin receptor -1.07
U16655_at Rn.37434 140693 9 74,025,487 Plcd4 phospholipase C, delta 4 1.12
D45920_at Rn.10684 84587 9 54,335,647 Plcl1 phospholipase C-like 1 1.14
rc_AI072770_s_at Rn.4550 24943 X 124,562,059 Plp proteolipid protein 1.14
M57728_g_at Rn.11175 296588 3 4,560,960 Pmpca peptidase (mitochondrial processing) alpha 1.09
D13907_g_at Rn.841 64198 4 -8,746,903 Pmpcb peptidase (mitochondrial processing) beta 1.12 1.26
D13907_at Rn.841 64198 4 -8,746,903 Pmpcb peptidase (mitochondrial processing) beta 1.10
J02776_s_at Rn.9346 29240 16 73,864,971 Polb polymerase (DNA directed), beta -1.08
AF062740_at Rn.31799 54705 5 -26,234,515 Alc4 Ppm2c protein phosphatase 2C, magnesium dependent, catalytic subunit 1.13
AF062740_g_at Rn.31799 54705 5 -26,234,515 Alc4 Ppm2c protein phosphatase 2C, magnesium dependent, catalytic subunit 1.10
AJ011607_g_at Rn.11846 301323 9 -32,207,688 Prim2 DNA primase, p58 subunit 1.06
AJ011607_at Rn.11846 301323 9 -32,207,688 Prim2 DNA primase, p58 subunit -1.13
U42413_at Rn.11089 25520 7 -137,658,778 Prkag1 protein kinase, AMP-activated, gamma 1 noncatalytic subunit -1.13
M13707_at Rn.9747 24681 1 -64,223,859 Prkcc protein kinase C, gamma 1.11
M18330_at Rn.98279 170538 16 -5,954,214 Alc7, 11, & 13 Prkcd protein kinase C, delta 1.14
rc_AA799421_at Rn.34966 29340 6 9,631,241 Alc17 Prkce protein kinase C, epsilon -1.29
D50093_s_at Rn.3936 24686 3 119,581,709 Prnp prion protein 1.10
X16554_at Rn.9761 29562 X 128,323,278 Prps1 phosphoribosyl pyrophosphate synthetase 1 1.19
D90265_s_at Rn.2668 29668 1 -172,373,871 Psma1 proteasome (prosome, macropain) subunit, alpha type 1 1.09
rc_AA891383_i_at Rn.1276 29672 2 203,787,813 Alc15 Psma5 proteasome (prosome, macropain) subunit, alpha type 5 1.55 1.44 1.57 1.78
D10729_s_at Rn.29244 24968 20 -4,786,490 Psmb8 proteosome (prosome, macropain) subunit, beta type 8 1.08
L27843_s_at Rn.9459 29463 9 -29,618,696 Ptp4a1 protein tyrosine phosphatase 4a1 1.10
U40790_at Rn.10278 29645 3 -74,693,135 Ptprj protein tyrosine phosphatase, receptor type, J 1.28
rc_AA874857_at Rn.114933 498407 14 -87,249,491 pur-beta transcription factor Pur-beta -1.16
rc_AI175539_at Rn.2005 25269 7 -116,148,899 Pvalb parvalbumin 1.16
E03344cds_s_at Rn.4065 29534 2 98,306,852 Pxmp3 peroxisomal membrane protein 3 1.08
rc_AA800190_at Rn.1518 25739 3 0 Pygb brain glycogen phosphorylase 1.10
J03481mRNA_at Rn.241 64192 14 70,744,388 Qdpr quinoid dihydropteridine reductase 1.18
J03481mRNA_g_at Rn.241 64192 14 70,744,388 Qdpr quinoid dihydropteridine reductase 1.18
M75153_at Rn.1016 81830 8 -68,950,978 Rab11a RAB11a, member RAS oncogene family 1.12
rc_AA894207_g_at Rn.28921 246324 9 -104,618,026 Rab31 RAB31, member RAS oncogene family -1.18
rc_AA800305_at Rn.44477 64633 9 -1,492,865 Rab5a RAB5A, member RAS oncogene family -1.15 -1.29
AF072935_at Rn.44477 64633 9 -1,492,865 Rab5a RAB5A, member RAS oncogene family -1.10
rc_AA900900_s_at Rn.7107 84014 9 -104,826,889 Ralbp1 ralA binding protein 1 -1.11
rc_AI169372_at Rn.105901 304268 12 -8,735,920 Rasl11a RAS-like family 11 member A 1.13
rc_AA893471_s_at Rn.98353 24718 4 8,150,872 Reln reelin -1.14
AF036548_g_at Rn.3504 117183 15 0 Rgc32 response gene to complement 32 1.14
AF036548_at Rn.3504 117183 15 0 Rgc32 response gene to complement 32 1.09
AF035151_s_at Rn.9796 54292 14 -81,365,932 Rgs12 regulator of G-protein signaling 12 -1.07
AB015191_g_at Rn.1943 60414 5 153,648,680 Alc4 Rhced Rhesus blood group CE and D -1.08
AB015191_at Rn.1943 60414 5 153,648,680 Alc4 Rhced Rhesus blood group CE and D -1.09
rc_AA900505_at Rn.2042 64373 6 -32,055,314 Alc17 Rhob rhoB gene 1.10
X92097_at Rn.1022 65165 12 -33,028,678 Alc6 & 10 Rnp24 coated vesicle membrane protein 1.10
X93352_at Rn.2262 81729 20 6,569,309 Rpl10a ribosomal protein L10A 1.12
S71021_s_at Rn.2660 117042 12 -36,347,261 Alc6 & 10 Rpl6 ribosomal protein L6 1.14
rc_AA799672_s_at Rn.2660 117042 12 -36,347,261 Alc6 & 10 Rpl6 ribosomal protein L6 1.15
X13549_s_at Rn.3359 81773 20 -5,849,544 Rps10 ribosomal protein S10 1.10
L81138exon_i_at Rn.2115 83789 10 13,975,349 Alc5 & 9 Rps2 ribosomal protein S2 -1.60 -1.48 -1.63 -1.76 -1.53
L81136cds_f_at Rn.2115 83789 10 13,975,349 Alc5 & 9 Rps2 ribosomal protein S2 -1.15 1.20
M64795_f_at - 24735 20 0 RT1@ Major histocompatibility locus -1.14
M11071_f_at Rn.40130 24737 20 3,412,286 RT1-Aw2 RT1 class Ib, locus Aw2 -1.38 -1.37 -1.41 -1.41
M10094_g_at Rn.40130 24737 20 3,412,286 RT1-Aw2 RT1 class Ib, locus Aw2 -1.20 -1.36
M31018_f_at Rn.40130 24737 20 3,412,286 RT1-Aw2 RT1 class Ib, locus Aw2 -1.22 -1.23
M24324_f_at Rn.40130 24737 20 3,412,286 RT1-Aw2 RT1 class Ib, locus Aw2 -1.09
AF074609mRNA_f_at Rn.40130 24737 20 3,412,286 RT1-Aw2 RT1 class Ib, locus Aw2 -1.14
U65217_i_at Rn.33311 309622 20 -4,730,786 RT1-Bb RT1 class II, locus Bb 1.46 1.39
X56596_at Rn.33311 309622 20 -4,730,786 RT1-Bb RT1 class II, locus Bb -1.16
M24026_f_at Rn.145396 309600 20 147,139 RT1-CE12 RT1 class I, CE12 1.17
AF025308_f_at Rn.160576 24977 20 3,552,628 RT1-Cl RT1 class Ib, locus Cl -1.12
M15562_g_at Rn.103146 294269 20 4,636,585 RT1-Da RT1 class II, locus Da 1.20
M15562_at Rn.103146 294269 20 4,636,585 RT1-Da RT1 class II, locus Da 1.17
L23128_g_at Rn.107070 24750 20 2,807,067 RT1-N3 RT1 class Ib gene, H2-TL-like, grc region (N3) 1.22 1.26 1.35
AF029240_g_at Rn.143874 294228 20 0 RT1-S3 RT1 class Ib, locus S3 -1.06
rc_AI235890_s_at Rn.143874 294228 20 0 RT1-S3 RT1 class Ib, locus S3 -1.21
X52817cds_s_at Rn.55126 116644 6 -94,400,519 Alc17 Rtn1 reticulon 1 1.14
M15114_g_at Rn.83595 83792 1 249,616,941 Scd2 stearoyl-Coenzyme A desaturase 2 1.08
Y00766_at Rn.87394 25657 3 -47,398,275 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.36 -1.38 -1.44 -1.39
Y00766_g_at Rn.87394 25657 3 -47,398,275 Scn3a sodium channel, voltage-gated, type III, alpha polypeptide -1.38 1.41
M62763complete_seq_at Rn.31887 25541 5 -129,158,061 Alc4 Scp2 sterol carrier protein 2 1.25
X99337cds_s_at Rn.37476 56064 8 62,408,946 Sdfr1 stromal cell derived factor receptor 1 1.10
X99338cds_i_at Rn.37476 56064 8 62,408,946 Sdfr1 stromal cell derived factor receptor 1 1.09
rc_AA799700_at Rn.100471 308993 1 0 Sephs2 selenophosphate synthetase 2 -1.45 -1.61 -1.39 -1.47
M63901_at Rn.6173 25719 3 -99,525,619 Sgne1 secretory granule neuroendocrine protein 1 1.10
M63901_g_at Rn.6173 25719 3 -99,525,619 Sgne1 secretory granule neuroendocrine protein 1 1.09
AF009604_at Rn.5909 81921 1 138,476,741 Sh3gl3 SH3 domain protein 2 C1 1.18
U90261UTR#1_g_at Rn.107226 84357 X -56,129,005 Sh3kbp1 SH3-domain kinase binding protein 1 1.10
AB001453_at Rn.59227 114858 17 0 Shc3 src homology 2 domain-containing transforming protein C3 -1.28 -1.29
rc_AA875411_s_at Rn.37542 65041 1 159,205,528 Skd3 suppressor of K+ transport defect 3 1.06
rc_AA891445_at Rn.37542 65041 1 159,205,528 Skd3 suppressor of K+ transport defect 3 1.11
rc_AI145680_s_at Rn.6085 25027 2 199,823,090 Slc16a1 solute carrier family 16 (monocarboxylic acid transporters), member 1 1.09
U66723_s_at Rn.10140 60423 3 -109,256,103 Slc28a2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 -1.15 -1.25
Y16774_at Rn.90036 64469 3 -109,549,289 Slc30a4 solute carrier family 30 (zinc transporter), member 4 1.09
AF004017_at Rn.11114 84484 14 -20,381,544 Slc4a4 solute carrier family 4, member 4 -1.24
AJ001290cds_at Rn.79242 114507 11 32,119,517 Slc5a3 solute carrier family 5 (inositol transporters), member 3 -1.49 -1.40 -1.77 -1.44 -1.47
M96601_at Rn.9968 29464 4 126,120,297 Alc14 & 16 Slc6a6 solute carrier family 6 (neurotransmitter transporter, taurine), member 6 -1.37
AB011530_at Rn.30002 65047 1 -246,928,385 Slit1 slit homolog 1 (Drosophila) 1.17 1.32
AB011531_at Rn.12298 83467 10 20,098,220 Slit3 slit homolog 3 (Drosophila) -1.08
U83883_at Rn.36148 64635 4 55,601,577 Snd1 staphylococcal nuclease domain containing 1 1.13
U75928UTR#1_s_at Rn.98989 24791 10 -40,823,352 Sparc secreted acidic cysteine rich glycoprotein 1.19
rc_AI639256_at Rn.40672 301255 9 11,125,212 Spats1 spermatogenesis associated, serine-rich 1 1.28 1.29
Y07534cds_s_at Rn.91257 24794 6 -128,383,141 Alc17 Spin2b Serine protease inhibitor -1.07
rc_AA800712_g_at Rn.13142 361813 20 -7,257,777 Stk38 serine/threonine kinase 38 -1.17 -1.37 -1.21
D12519_s_at Rn.9943 116470 12 -690,406 Stx1a syntaxin 1A (brain) -1.10
L10362_at Rn.58137 117556 1 -130,761,497 Sv2b synaptic vesicle glycoprotein 2b 1.11
rc_AI639484_at Rn.58137 117556 1 -130,761,497 Sv2b synaptic vesicle glycoprotein 2b 1.09
M27925_at Rn.506 29179 4 151,500,081 Alc14 & 16 Syn2 synapsin II 1.17
AF053938_s_at Rn.9908 192117 20 -32,816,659 Syngap1 synaptic Ras GTPase activating protein 1 homolog (rat) -1.15
U85513_at Rn.74259 60567 7 -128,149,672 Syt10 synaptotagmin X -1.07
U20105_at Rn.48074 60565 2 198,770,093 Syt6 synaptotagmin 6 -1.09
U20106_at Rn.91884 59267 1 213,035,104 Syt7 synaptotagmin 7 -1.13
U40188_at Rn.11270 171152 X -94,415,515 Taf9l TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa 1.14
M83107_at Rn.34397 25123 8 -48,910,973 Tagln transgelin -1.17 -1.22 -1.23
rc_AA893860_at Rn.22757 294810 2 -60,694,140 Tars threonyl-tRNA synthetase 1.08
U09228_at Rn.23354 84382 18 66,209,063 Tcf4 transcription factor 4 -1.18
rc_AI639517_at Rn.23354 84382 18 66,209,063 Tcf4 transcription factor 4 -1.20
rc_AA893702_s_at Rn.1829 64365 14 -84,598,335 Tcn2 transcobalamin 2 -1.07
K01934mRNA#2_at Rn.81140 25357 1 -154,725,746 Thrsp thyroid hormone responsive protein 1.09 1.30
U88630_at Rn.2398 81813 7 -73,842,010 Tieg TGFB inducible early growth response -1.07
U09256_at Rn.5950 64524 16 5,908,756 Alc7, 11, & 13 Tkt transketolase 1.11
rc_AA818982_at Rn.3364 25359 7 -28,106,846 Tmpo thymopoietin -1.16
rc_AI639532_at Rn.43529 296369 3 -155,713,170 Tnnc2 troponin C2, fast -1.15
rc_AA899854_at Rn.90996 360243 10 -87,785,706 Top2a topoisomerase (DNA) 2 alpha -1.09
rc_AI230748_at Rn.36610 116646 15 56,768,246 Tpt1 tumor protein, translationally controlled 1 -1.11
L04760_at Rn.6763 81002 2 0 Trim23 tripartite motif protein 23 1.07
rc_AI169370_at Rn.99661 64158 7 -137,805,841 Tuba1 tubulin, alpha 1 -1.09
AB011679_at Rn.2458 29214 20 3,060,491 Tubb5 tubulin, beta 5 1.16
rc_AI103911_at Rn.2603 291103 17 40,432,646 Uqcrfs1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 1.08
M32167_at Rn.1923 83785 9 10,519,065 Vegfa vascular endothelial growth factor A -1.09
M32167_g_at Rn.1923 83785 9 10,519,065 Vegfa vascular endothelial growth factor A -1.16
U14746_at Rn.11059 24874 4 149,774,236 Alc14 & 16 Vhl von Hippel-Lindau syndrome homolog 1.10
rc_AI071435_at Rn.51354 25218 20 -5,074,730 Vps52 vacuolar protein sorting 52 (yeast) -1.22
AF033027_at Rn.6525 64351 14 86,638,972 Ykt6 prenylated SNARE protein 1.11
U67082_at Rn.10663 25165 6 143,317,934 Alc17 Znf386 zinc finger protein 386 (Kruppel-like) 1.15

Comb. regions = combined regions; Acb. = accumbens; Amyg. = amygdala; Fr. Ctx. = frontal cortext; Hipp. = hippocampus; CPU = caudate-putamen.

Positive fold differences are I/iNP; negative are iNP/iP.