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. 2007 Jul 17;35(15):4977–4988. doi: 10.1093/nar/gkm520

Table 2.

CD and Tm data of d(T2G4T2) and d(G4T4G4) and related oligonucleotides

Code Type Sequencea CD Typeb,c TmdTm)e (°C)
d(T2G4T2) and related sequences
PG17 All PO-DNA PO-d(TTGGGGTT) I 66.0
PG18 All PS-DNA PS-d(TTGGGGTT) I 73.5(43)
74.0
PG19 All PS-2′F-ANA PS-d(TTGGGGTT) I 83.0 (+1.1)
PG20 PS-2′F-ANA-G PS-d(TTGGGGTT) I 87.0 (+3.3)
d(G4T4G4) and related sequences
PG21 All PO-DNA PO-d(GGGGTTTTGGGG) II 65(44)
64.4
PG22 All PO-2′F-ANA PO-d(GGGGTTTTGGGG) I 90.0 (+2.1)
PG23 G-syn PO-d(GGGGTTTTGGGG) I 72.5 (+2.0)
PG24 G-anti PO-d(GGGGTTTTGGGG) II 66.2 (+0.5)

aCapital and bold letter: 2′F-ANA; PO: phosphate linkage; PS: phosphorothioate linkage.

bCD type I & II refer to the note in Table 1.

cdT2G4T2 and related sequences (PG17–20): phosphate-buffered saline (PBS buffer, pH 7.2 at 25°C), 137 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 8 mM Na2HPO4; strand concentration: 20 µM for both CD and Tm experiments. dG4T4G4 and related sequences (PG21–24): 10 mM sodium phosphate buffer, 0.1 mM EDTA, pH 7 and 200 mM NaCl; strand concentration: 10 µM.

ddT2G4T2 and related sequences (PG17–20): phosphate-buffered saline (PBS buffer, pH 7.2 at 25°C), 137 mM NaCl, 2.7 mM KCl, 1.5 mM KH2PO4, 8 mM Na2HPO4; strand concentration: 20 µM; Tm data were generated from concentration-dependent CD spectra (Figure S5 and ‘Materials and methods’ section). dG4T4G4 and related sequences (PG21–24): 10 mM sodium phosphate buffer, 0.1 mM EDTA, pH 7 and 200 mM NaCl; strand concentration: 100 µM; Tm measurements were conducted at 295 nm wavelength.

eΔTm (°C) is the Tm change/2′F-ANA modification of PG18–20 or PG22–24 relative to the control PG18 (74.0°C) or PG21 (PG64.4°C), respectively.