Table 3.

Pairwise comparisons between paralogous clusters and the number of shared PFCs (phylogenetic footprint cliques) and their complete lengths

	KCNA 3-2-10 clusters
KCNA 6-1-5 clusters		Hs	Gg	Xt	Gaa	Ola	Tra	Tna	Trb	Tnb	Gab	Drb
	Number of cliques
	Hs	24	17	21	13	13	9	7	8	7	13	13
	Gg	20	12	20	9	18	9	6	15	9	15	8
	Xt	17	11	39	8	18	11	10	12	6	12	11
	Tra	3	2	3	1	2	2	1	3	1	3	2
	Tna	3	3	3	1	2	1	1	3	2	2	2
	Ola	1	2	6	1	2	1	1	3	1	2	2
	Gaa	3	1	2	1	2	1	1	2	1	1	1
	Dra	2	1	0	1	1	1	1	2	1	0	2
	Tnb	2	2	2	2	1	2	2	2	1	2	3
	Total length
	Hs	1248	774	1177	564	584	407	340	644	338	830	556
	Gg	980	508	946	420	815	382	293	869	381	987	330
	Xt	801	450	3014	332	742	521	438	633	302	639	406
	Tra	155	444	512	33	397	89	33	214	38	163	454
	Tna	155	510	486	43	421	43	43	139	69	89	359
	Ola	136	477	667	66	441	66	66	289	60	196	427
	Gaa	100	58	98	99	132	99	99	114	31	31	291
	Dra	83	21	0	52	52	52	52	127	42	0	105
	Tnb	50	57	64	68	72	74	67	54	23	79	98