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. 2007 Sep 26;2(9):e947. doi: 10.1371/journal.pone.0000947

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This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.

This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.

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Plot generated from MUMmer coords file output using script written for R. Shared blocks of 1.5 Kb or greater were plotted as diagonal lines outlined in red (forward matches) and green (inversions). Positions of ISFtu elements (transposons) were plotted as colored spots (see legend). Red and green blocks on the axes correspond to forward and inversion matches, respectively, to the other genome, and different levels show overlapping matches. The black and white bars on each axis show overall matching regions (black) and gapped regions of no match (white). The two direct repeats (DR) diagonals are labeled DR1, DR2 along with the partial DR3 repeat (Table S4).