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. Author manuscript; available in PMC: 2007 Sep 19.
Published in final edited form as: AIDS Res Hum Retroviruses. 2006 Oct;22(10):968–978. doi: 10.1089/aid.2006.22.968

FIG. 2.

FIG. 2

Phylogenetic profile analysis of the whole alignment.37 Negative correlation values (x-axis) indicate recombination breakpoints. Sequences 060302P83 and 060302P85 were excluded from the analysis because they contained many gaps. Low correlation values at the beginning and at the end of the alignment are noise.