Skip to main content
. Author manuscript; available in PMC: 2007 Sep 19.
Published in final edited form as: AIDS Res Hum Retroviruses. 2006 Oct;22(10):968–978. doi: 10.1089/aid.2006.22.968

TABLE 4.

Likelihood Values, ω Estimates (ωM2, ωM3, AND ωM8), Proportion of Sites with A ω > 1 (ρM2, ρM3, and ρM8) and Number of Positively Selected Sites with a Posterior Probability > 0.95 (nM2, nM3, AND nM8)a

−ln LM0 −ln LM1 −ln LM2 ωM2 pM2 nM2 −ln LM3 ωM3 pM3 nM3 −ln LM7 −ln LM8 ωM8 pM8 nM8
Clade A 60 10.4 59 53.3 59 11.0 5.56 0.053 8 59 13.6 4.46 0.082 16 59 59.2 59 11.2 5.08 0.064 9
Clade B 25 9.2 25 9.7 25 9.7 25 8.7 25 9.7 25 9.7
a

The comparisons between models M0 and M3, M1 and M2, and M7 and M8 were only significant (p < 0.001) for clade A. ω and p estimates under purifying selection (ω < 1) or neutral selection (ω = 0) are not reported for any model.