Table 2.
Pre-steady-state kinetic analysis of wild-type and mutant T4 DNA polymerases with double-stranded 2AP-DNA substrate
Enzyme | Rate-limiting step before hydrolysis*
|
|||
---|---|---|---|---|
1
|
2
|
|||
k1, s−1 | a1 | k2, s−1 | a2 | |
Wild type | 3.6 ± 0.2 | 0.8 | 20.1 ± 2.7 | 0.2 |
G255S | 0.34 ± 0.01† | 0.6 | 14.9 ± 1.8† | 0.4 |
D131N | 0.5 ± 0.1 | 0.6 | 21.6 ± 2.9 | 0.4 |
D131G | 0.02 ± 0.01 | 1.0 |
Rate constants k1 and k2 were determined from double-exponential curve fits of time courses measuring the increase in fluorescence intensity in proofreading reactions with the wild-type, G255S-, or D131N-DNA polymerase and the G+C-rich 2AP-DNA substrate. The relative amplitudes for the two rates are designated a1 and a2, respectively. The time course for the D131G-DNA polymerase was best described by a single-exponential equation, and the corresponding rate constant is given for comparison in the k2 column.
Data are from Marquez and Reha-Krantz (4).