Table 1. Identification of culturable HRV clinical isolates by phylogenetic tree reconstruction.
Serotype | # Isolates | NIm1A Region of VP1 | P1-P2 Region of 5'NCR | ||
Boot-strap Value (%) | Identity to Reference sequence (%) | Boot-strap Value (%) | Identity to Reference sequence (%) | ||
HRV1B | 1 | 86 | 90 | 60 | 97 |
HRV9 | 1 | 90 | 91 | 83 | 96 |
HRV11 | 1 | 100 | 91 | 99 | 98 |
HRV15 | 1 | 100 | 90 | 64 | 96 |
HRV18 | 1 | 100 | 94 | 90 | 96 |
HRV19 | 11 | 100 | 89–91 | 98–100 | 95–96 |
HRV21 | 2 | 100 | 92 | 93–98 | 97–98 |
HRV28 | 3 | 99–100 | 87–89 | 99–100 | 97 |
HRV34 | 3 | 95–100 | 90 | 100 | 95 |
HRV36 | 1 | 90 | 91 | 75 | 97 |
HRV38 | 7 | 100 | 90 | 98–100 | 92–98 |
HRV43 | 5 | 100 | 88 | 100 | 97 |
HRV47 | 5 | 99–100 | 90–91 | 87–91 | 97 |
HRV49 | 4 | 82–94 | 90 | 84 | 96–97 |
HRV54 | 4 | 93–95 | 90–91 | 85–95 | 98–99 |
HRV55 | 3 | 100 | 95 | 100 | 97 |
HRV56 | 9 | 96–99 | 88–89 | 81–94 | 93–95 |
HRV57 | 1 | 100 | 95 | 100 | 98 |
HRV60 | 1 | 100 | 90 | 99 | 95 |
HRV61 | 1 | 100 | 93 | 99 | 95 |
HRV65 | 1 | 100 | 94 | 100 | 99 |
HRV85 | 2 | 100 | 90–92 | 61 | 95 |
HRV89a | 5 | 77–80 | 91–92 | 62–96 | 99–100 |
HRV98 | 6 | 80–98 | 91–95 | 95–100 | 97–98 |
Four isolates clustered with P1-P2 reference sequence with highly significant bootstrap values (96%), and one with lower but still significant bootstrap value (62%).