Table 1.
Primer and probe sequences employed for PRNP analysis
Primer/Probe | Sequence (5'-3') |
136F2 forward primer | GCAGCTGGAGCAGTGGTAGG |
171R2 reverse primer | GATGTTGACACAGTCATGCAC |
136A2 probe | GGGAAGFGCCAFGAGCAGGC3 |
154H2 probe | GACCGFTACTAFCATGAAAACATG3 |
171R6 probe | CAGTGGAFCGGTAFAGTAAC5AGAA3 |
141C3 probe | GAGCAGGCCTCTFATAC5FTTTGG3 |
F and 3 represent fluorescein dT and 3' phosphate respectively. Common SNPs within codons 136, 141, 154 and 171 are underlined. 5 represents the universal base 5-nitroindol employed to neutralise polymorphisms within codons 143 and 175.