Table 10.
Complete list of EMUs generated for the simulation model of glucose from EMU network decomposition of the gluconeogenesis pathway. The mass isotopomer distribution of glucose, including all carbon, hydrogen, and oxygen atoms was simulated. This required only 493 EMUs (354 EMUs in the reduced model). In comparison 2,637,120 isotopomers/cumomers would have been required to describe this system.
Full EMU model
|
Reduced EMU model
|
||
---|---|---|---|
EMU size | No. EMUs in subnetwork | EMU size | No. EMUs in subnetwork |
1 | 11, 8 | 1 | 8, 5 |
2 | 12, 11, 9 | 2 | 9, 8, 6 |
3 | 11, 11, 11, 10, 9 | 3 | 8, 8, 8, 7, 6 |
4 | 12, 11, 11, 11, 9, 9, 9, 6, 1 | 4 | 9, 8, 8, 8, 6, 6, 6, 4, 1 |
5 | 12, 12, 11, 10, 9, 9, 9, 9, 5, 6, 1, 1, 1 | 5 | 9, 9, 8, 7, 6, 6, 6, 6, 4, 4, 1, 1, 1 |
6 | 12, 10, 10, 10, 10, 9, 9, 9, 5, 1, 1 | 6 | 9, 8, 7, 7, 7, 6, 6, 6, 4, 1, 1 |
7 | 11, 10, 10, 10, 9, 8 | 7 | 9, 7, 7, 7, 6, 6 |
8 | 10, 9, 8 | 8 | 7, 7, 6 |
9 | 9, 5 | 9 | 7, 3 |
10 | 5 | 10 | 3 |
11 | none | 11 | none |
12 | none | 12 | none |
13 | 6 | 13 | 4 |
14 | none | 14 | none |
15 | none | 15 | none |
16 | none | 16 | none |
17 | 5 | 17 | 4 |
18 | 5, 4 | 18 | 4, 4 |
19 | 6 | 19 | 4 |
| |||
Total number of EMUs = 493 | Total number of EMUs = 354 |