Table 3.

Average correlations between expression levels of genes in a TM and the expression levels of associated TFs.

Factor	Module	Module description	Correlation with module	P value of correlation
FKH1	1	Cell Cycle	0.53	0.001
MCM1	1	Cell Cycle	0.14	0.007
INO4	1	Cell Cycle	0.22	0.029
GCN4	2	Amio Acid Metabolism	0.09	0.539
CBF1	2	Amio Acid Metabolism	0.17	0.079
MET4	2	Amio Acid Metabolism	0.00	0.497
INO4	2	Amio Acid Metabolism	0.33	0.001
MET31	2	Amio Acid Metabolism	-0.14	0.789
SWI4	3	Cell Cycle	0.01	0.689
MCM1	3	Cell Cycle	0.04	0.079
FKH2	3	Cell Cycle	-0.24	0.001
INO4	3	Cell Cycle	0.48	0.001
NDD1	3	Cell Cycle	0.39	0.001
GLN3	4	Sporulation	-0.21	0.001
YFL044C	4	Sporulation	0.09	0.6
RCS1	4	Sporulation	-0.37	0.001
HAP3	5	Protein Biosynthesis	0.12	0.003
RCS1	5	Protein Biosynthesis	-0.24	0.001
ARG80	5	Protein Biosynthesis	0.09	0.142
MBP1	6	Cell Cycle	-0.02	0.858
SWI4	6	Cell Cycle	0.02	0.841
SKN7	6	Cell Cycle	-0.12	0.882
ASH1	6	Cell Cycle	0.24	0.156
ACE2	6	Cell Cycle	-0.13	0.003
SWI6	6	Cell Cycle	0.12	0.227
STB1	6	Cell Cycle	0.15	0.001
SUM1	7	Sporulation	0.23	0.001
PHO4	7	Sporulation	0.39	0.001
MBP1	8	Cell Cycle	-0.29	0.001
DOT6	8	Cell Cycle	0.16	0.001
SWI4	8	Cell Cycle	0.32	0.001
SWI6	8	Cell Cycle	0.03	0.445
SUM1	9	Sporulation	0.26	0.001
PDR1	10	Protein Biosynthesis	-0.18	0.001
MET4	10	Protein Biosynthesis	0.06	0.001
RAP1	10	Protein Biosynthesis	-0.17	0.001
FHL1	10	Protein Biosynthesis	0.04	0.001