Table 3.
Oligonucleotide | Length (nt) | Sequence (5'-3') |
RNA-5' nick | 19 | CAGCAGCAAAUGAAAAAUC |
DNA-5' nick | 19 | CAGCAGCAAATGAAAAATC |
RNA-3' nick | 25 | CCUGCAACAGUGCCACGCUGAGAGC |
DNA-3' nick | 25 | CCTGCAACAGTGCCACGCTGAGAGC |
DNA-3'P nick | 25 | CCTGCAACAGTGCCACGCTGAGAGC-P |
DNA-opposite | 46 | AGATTTTTCATTTGCTGCTGGCTCTCAGCGTGGCACTGTTGCAGGC |
Kinase-DNA | 25 | GCTTTCCGAGTACCGGGGTCTTCCG |
All oligonucleotides were PAGE purified and labelled as described in the Methods section. P stands for a 3' phosphate group.