Table 1.
X-Ray Data Collection and Refinement, AcrA(45-312)-4M
Data Collection | ||||
---|---|---|---|---|
Beamline | APS-BM19 | ALS-8.2.2 | ||
Data set | λ1 | λ2 | λ3 | λ1 |
Wavelength (Å) | 0.97938 | 0.97955 | 0.96415 | 1.0000 |
Resolution (Å)a | 50-3.00 (3.11-3.00) | 50-3.39 (3.59-3.39) | 50-3.50 (3.63-3.50) | 50-2.70 (2.77-2.70) |
Completeness (%) | 99.3 (99.3) | 99.8 (99.9) | 99.8 (99.9) | 97.3 (91.1) |
Redundancy | 4.2 (3.4) | 4.4 (4.5) | 4.2 (3.8) | 5.0 (3.9) |
I/σ | 13.5 (2.3) | 16.6 (4.6) | 12.0 (4.0) | 14.6 (2.3) |
Rmergeb | 13.9 (76.1) | 9.8 (38.9) | 18.5 (53.4) | 9.0 (42.9) |
Phasing | |||
---|---|---|---|
Se λ1 | Se λ2 | Se λ3 | |
Anomalous and dispersive differences (%)c | |||
Se λ1 | 4.2 | ||
Se λ2 | 1.8 | 2.4 | |
Se λ3 | 2.0 | 3.8 | 3.1 |
Anomalous phasing powerd | 1.5 | 0.8 | 0.7 |
Number of sites | 16 | ||
Figure of merit (40-3.0 Å) | 0.59 |
Refinement | |||
---|---|---|---|
Resolution | 50.0-2.71 (2.77-2.71) | ||
Rcryst (%)e | 23.7 (40.8) | Rms deviation | |
Rfree (%)e | 27.5 (47.4) | Bonded B factor (Å2) | 3.30 |
Number of reflections | From ideal geometry | ||
Working set | 35,426 | Lengths (Å) | 0.010 |
Test set | 1,873 | Angles (°) | 1.608 |
Number of atoms | Average B factors (Å2) | ||
Protein | 6936 | Protein | 89.2 |
Solvent | 36 | Solvent | 64.0 |
Highest resolution shell is in parentheses.
Anomalous and dispersive differences = 100 × rms ΔF/rms F, where ΔF for anomalous differences is (F+h - F-h)/2 (diagonal element) and for dispersive differences is Fλi - Fλj (off-diagonal).
FH″/E, with FH″ being the anomalous component of the heavy atom structure factor and E the rms lack-of-closure error.