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. Author manuscript; available in PMC: 2007 Oct 2.
Published in final edited form as: Structure. 2006 Mar;14(3):577–587. doi: 10.1016/j.str.2005.11.015

Table 1.

X-Ray Data Collection and Refinement, AcrA(45-312)-4M

Data Collection
Beamline APS-BM19 ALS-8.2.2
Data set λ1 λ2 λ3 λ1
Wavelength (Å) 0.97938 0.97955 0.96415 1.0000
Resolution (Å)a 50-3.00 (3.11-3.00) 50-3.39 (3.59-3.39) 50-3.50 (3.63-3.50) 50-2.70 (2.77-2.70)
Completeness (%) 99.3 (99.3) 99.8 (99.9) 99.8 (99.9) 97.3 (91.1)
Redundancy 4.2 (3.4) 4.4 (4.5) 4.2 (3.8) 5.0 (3.9)
I/σ 13.5 (2.3) 16.6 (4.6) 12.0 (4.0) 14.6 (2.3)
Rmergeb 13.9 (76.1) 9.8 (38.9) 18.5 (53.4) 9.0 (42.9)
Phasing
Se λ1 Se λ2 Se λ3
Anomalous and dispersive differences (%)c
 Se λ1 4.2
 Se λ2 1.8 2.4
 Se λ3 2.0 3.8 3.1
Anomalous phasing powerd 1.5 0.8 0.7
Number of sites 16
Figure of merit (40-3.0 Å) 0.59
Refinement
Resolution 50.0-2.71 (2.77-2.71)
Rcryst (%)e 23.7 (40.8) Rms deviation
Rfree (%)e 27.5 (47.4) Bonded B factor (Å2) 3.30
Number of reflections From ideal geometry
Working set 35,426 Lengths (Å) 0.010
Test set 1,873 Angles (°) 1.608
Number of atoms Average B factors (Å2)
Protein 6936 Protein 89.2
Solvent 36 Solvent 64.0
a

Highest resolution shell is in parentheses.

b
Rmerge=100×hiIh,iIhhiIh,i
, where Ih is the mean intensity of symmetry-related reflections, Ih,j.
c

Anomalous and dispersive differences = 100 × rms ΔF/rms F, where ΔF for anomalous differences is (F+h - F-h)/2 (diagonal element) and for dispersive differences is Fλi - Fλj (off-diagonal).

d

FH″/E, with FH″ being the anomalous component of the heavy atom structure factor and E the rms lack-of-closure error.

e
Rfactor=100×hklFobsFcalchklFobs
, where Rfree is calculated for a randomly chosen 5% of reflections (F > 0) omitted from refinement, and Rcryst is calculated for the remaining 95% of reflections (F > 0) included in refinement.