Table 3.
Sequence alignment of tandem repeats in imprinted genes across human, mouse, and cattle
| Gene | Number of tandem repeats | Aligned repeatsa | Score | Repeats in CpG islands | ||
|---|---|---|---|---|---|---|
| Human | Mouse | Cattle | ||||
| GNAS | 7 | 13 | 1 | H3/M1 | 75 | H1, H2, H3, M1, M2 |
| H5/M7 | 75 | |||||
| H3/M2 | 72 | |||||
| H2/M9 | 64 | |||||
| IGF2R | 20 | 3 | 11 | H5/C1 | 76 | H5, C1, C3, C10, C11 |
| H5/M2 | 64 | |||||
| H5/C3 | 64 | |||||
| H5/C11 | 64 | |||||
| H20/C1 | 59 | |||||
| H20/C3 | 56 | |||||
| MAGEL2 | 2 | 3 | 4 | H2/C4 | 91 | C2 |
| H1/C4 | 88 | |||||
| M2/C1 | 76 | |||||
| H1/C3 | 61 | |||||
| H2/M1 | 51 | |||||
| MEST | 2 | 0 | 1 | H2/C1 | 89 | |
| PEG3 | 7 | 7 | 11 | H7/M6 | 90 | |
| H5/C9 | 80 | |||||
| H6/M5 | 80 | |||||
| M5/C9 | 76 | |||||
| H2/C3 | 72 | |||||
| H7/M2 | 66 | |||||
| H7/C1 | 66 | |||||
| M7/C10 | 66 | |||||
| H6/M3 | 60 | |||||
| H7/C9 | 57 | |||||
| M7/C9 | 57 | |||||
| H3/C2 | 53 | |||||
| RTL1 | 2 | 2 | 0 | H1/M1 | 80 | |
| XIST | 4 | 3 | 6 | H2/C2 | 71 | |
| H4/M1 | 47 | |||||
| OSBPL5 | 6 | 2 | 3 | M2/H1 | 83 | |
| M2/H4 | 83 | |||||
| M2/H5 | 83 | |||||
| M2/C3 | 83 | |||||
| PEG10 | 2 | 9 | 1 | H2/M3 | 89 | |
| H2/M4 | 81 | |||||
| M1/C1 | 55 | |||||
aH = human, M = mouse, C = cattle