Table 2.

HKA tests on the MSL complex genes in D. melanogaster

Gene	Intraspecific			Interspecies, total no. of differences*	msl2	msl3	mle	mof
	No. of segregating sites	Total no. of sites	Sample size†
msl1	29	3,168	14	162.63	0.117	0.029	0.742	0.117
msl2	61	2,245	11	150.51		0.560	0.034	0.982
msl3	48	1,880	10	86.14			0.003	0.545
mle	46	4,743	16	293.65				0.020
mof	37	2,484	13	112.36

P values for all pairwise comparisons between the D. melanogaster MSL complex genes are shown with significant deviations from neutral expectations highlighted in bold.

*D. simulans was used for the interspecies comparison.

^†No. of D. melanogaster strains sequenced.